View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7183_low_3 (Length: 390)

Name: NF7183_low_3
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7183_low_3
NF7183_low_3
[»] chr7 (5 HSPs)
chr7 (17-378)||(6969065-6969425)
chr7 (145-371)||(6921950-6922176)
chr7 (145-371)||(6956036-6956262)
chr7 (149-339)||(6958885-6959077)
chr7 (48-77)||(2754293-2754322)
[»] chr4 (1 HSPs)
chr4 (46-77)||(51238018-51238049)
[»] scaffold0576 (1 HSPs)
scaffold0576 (48-77)||(2214-2243)
[»] chr8 (1 HSPs)
chr8 (48-77)||(3731772-3731801)
[»] chr6 (1 HSPs)
chr6 (48-77)||(15357225-15357254)
[»] chr2 (1 HSPs)
chr2 (48-77)||(28655995-28656024)
[»] chr1 (2 HSPs)
chr1 (48-77)||(20262163-20262192)
chr1 (46-74)||(2445466-2445494)
[»] chr5 (1 HSPs)
chr5 (37-77)||(28735822-28735862)
[»] chr3 (1 HSPs)
chr3 (46-82)||(31652453-31652489)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 6969065 - 6969425
Alignment:
Q  17 catcgacatatgtcaccaatacatgtaagtacattcaatcacttccattttcttaaattataatcgctatcgtgttttataccttcgtatcattgcaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969065 catcgacatatgtcaccaatacatgtaagtacattcaatcacttccattttcttaaattataatcgctatcgtgttttataccttcgtatcattgcaatt 6969164  T
Q  117 ttaataaagtaccacaaagagaaatgcgagataacataacataatgtttgtaaactaaatcaaacctgcaagttggaattatttcttcctcaacatctct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  6969165 ttaataaagtaccacaaagagaaatgcgagataacataacataatgtttgtaaactaaatcaaacctgcaagttggaattatttcttcttccacatctct 6969264  T
Q  217 tgaccatagtgaccactccaattgcacagctgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtatttt 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969265 tgaccatagcgaccactccaattgcacagctgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtatttt 6969364  T
Q  317 atttttccctcttcaacgagtttcttaagctccccaatcttagaaagaaaaccaaaagttga 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6969365 atttttccctcttcaacgagtttcttaagctccccaatcttagaaa-aaaaccaaaagttga 6969425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 145 - 371
Target Start/End: Original strand, 6921950 - 6922176
Alignment:
Q  145 agataacataacataatgtttgtaaactaaatcaaacctgcaagttggaattatttcttcctcaacatctcttgaccatagtgaccactccaattgcaca 244  Q
    |||||||| |||| |||||||| |||||||||   ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  6921950 agataacaaaacacaatgtttgcaaactaaattccacctgcaagttggaattatgtcttcctcgacatctcttgaccatagtgaccactccaactgcaca 6922049  T
Q  245 gctgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtattttatttttccctcttcaacgagtttcttaa 344  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  6922050 gctgttattggatgaactgcatgtgctcttctgattgttgcagctgaggcctcagacaaaccaatgtattttatttttccctcttcaacaagttttttaa 6922149  T
Q  345 gctccccaatcttagaaagaaaaccaa 371  Q
    |||| || |||||| ||||||||||||    
T  6922150 gctctccgatcttacaaagaaaaccaa 6922176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 145 - 371
Target Start/End: Complemental strand, 6956262 - 6956036
Alignment:
Q  145 agataacataacataatgtttgtaaactaaatcaaacctgcaagttggaattatttcttcctcaacatctcttgaccatagtgaccactccaattgcaca 244  Q
    |||||||| |||| |||||||| |||||||||   ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  6956262 agataacaaaacacaatgtttgcaaactaaattccacctgcaagttggaattatgtcttcctcgacatctcttgaccatagtgaccactccaactgcaca 6956163  T
Q  245 gctgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtattttatttttccctcttcaacgagtttcttaa 344  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  6956162 gctgttattggatgaactgcatgtgctcttctgattgttgcagctgaggcctcagacaaaccaatgtattttatttttccctcttcaacaagttttttaa 6956063  T
Q  345 gctccccaatcttagaaagaaaaccaa 371  Q
    |||| || |||||| ||||||||||||    
T  6956062 gctctccgatcttacaaagaaaaccaa 6956036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 149 - 339
Target Start/End: Complemental strand, 6959077 - 6958885
Alignment:
Q  149 aacataacataatgtttgtaaactaaat--caaacctgcaagttggaattatttcttcctcaacatctcttgaccatagtgaccactccaattgcacagc 246  Q
    |||| |||||||| ||||||||||||||  || ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  6959077 aacaaaacataatatttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcaacatctcttgaccacagtgaccactccaactgcacagc 6958978  T
Q  247 tgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtattttatttttccctcttcaacgagttt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6958977 tgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtattttattttgccctcttcaacaagttt 6958885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 2754293 - 2754322
Alignment:
Q  48 cattcaatcacttccattttcttaaattat 77  Q
    ||||||||||||||||||||||||||||||    
T  2754293 cattcaatcacttccattttcttaaattat 2754322  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 77
Target Start/End: Original strand, 51238018 - 51238049
Alignment:
Q  46 tacattcaatcacttccattttcttaaattat 77  Q
    ||||||||||||||||||||||||||||||||    
T  51238018 tacattcaatcacttccattttcttaaattat 51238049  T

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Target: scaffold0576 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 2243 - 2214
Alignment:
Q  48 cattcaatcacttccattttcttaaattat 77  Q
    ||||||||||||||||||||||||||||||    
T  2243 cattcaatcacttccattttcttaaattat 2214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 3731801 - 3731772
Alignment:
Q  48 cattcaatcacttccattttcttaaattat 77  Q
    ||||||||||||||||||||||||||||||    
T  3731801 cattcaatcacttccattttcttaaattat 3731772  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 15357254 - 15357225
Alignment:
Q  48 cattcaatcacttccattttcttaaattat 77  Q
    ||||||||||||||||||||||||||||||    
T  15357254 cattcaatcacttccattttcttaaattat 15357225  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 28656024 - 28655995
Alignment:
Q  48 cattcaatcacttccattttcttaaattat 77  Q
    ||||||||||||||||||||||||||||||    
T  28656024 cattcaatcacttccattttcttaaattat 28655995  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 20262192 - 20262163
Alignment:
Q  48 cattcaatcacttccattttcttaaattat 77  Q
    ||||||||||||||||||||||||||||||    
T  20262192 cattcaatcacttccattttcttaaattat 20262163  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 2445466 - 2445494
Alignment:
Q  46 tacattcaatcacttccattttcttaaat 74  Q
    |||||||||||||||||||||||||||||    
T  2445466 tacattcaatcacttccattttcttaaat 2445494  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 28735822 - 28735862
Alignment:
Q  37 acatgtaagtacattcaatcacttccattttcttaaattat 77  Q
    |||| ||| |||||||||||||||| |||||||||||||||    
T  28735822 acatataattacattcaatcacttctattttcttaaattat 28735862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 31652489 - 31652453
Alignment:
Q  46 tacattcaatcacttccattttcttaaattataatcg 82  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  31652489 tacattcaatcacttctattttcttaaattattatcg 31652453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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