View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7183_low_6 (Length: 290)
Name: NF7183_low_6
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7183_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 2170774 - 2170502
Alignment:
| Q |
1 |
ttaataacattctttctcactcagatactatatatgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaatttgatggcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2170774 |
ttaataacattctttctcactcagatactatatctgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaaattgatggcat |
2170675 |
T |
|
| Q |
101 |
ggctttcttgtaggtgacctattttcttgtattttacccgcacaattttgttttttcttatacttgacgtttggaatgttattacataaacataatccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2170674 |
ggctttcttgtaggtgacctattttcttgtattttacccgcacaattttgttttttcttatacttgacgtttggaatgttgttacataaacataatccat |
2170575 |
T |
|
| Q |
201 |
gatcctttgctaaagagatcatctttcttatcaatccaattggctattacttctaaatatctatcaatccatg |
273 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2170574 |
gatcctttgctaaagagaccatctttcttatcaatccaattggctattacttctaaatatctatcaatccatg |
2170502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 28851758 - 28851486
Alignment:
| Q |
1 |
ttaataacattctttctcactcagatactatatatgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaatttgatggcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
28851758 |
ttaataacattctttctcactcagatactatatatgttccttcatttctttctcaccattatttctgcttaatgaattttaattgaaaaattgatggggg |
28851659 |
T |
|
| Q |
101 |
ggctttcttgtaggtgacctattttcttgtattttacccgcacaattttgttttttcttatacttgacgtttggaatgttattacataaacataatccat |
200 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
28851658 |
gactttcttgtaggtgacttattttcttgtattttacccgcacaattttgttttttcttatacttgacgtttggaatgttgttacataaacataatacat |
28851559 |
T |
|
| Q |
201 |
gatcctttgctaaagagatcatctttcttatcaatccaattggctattacttctaaatatctatcaatccatg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28851558 |
gatcctttgctaaagagatcatctttcttatcaatccaattggctattacttctaaatatctatcaatccatg |
28851486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 21401868 - 21402138
Alignment:
| Q |
1 |
ttaataacattctttctcactcagatactatatatgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaatttgatggcat |
100 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||| || |||||| ||||||||||||||||| |||||| || ||||||||| | ||| |||||||||| |
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|
| T |
21401868 |
ttaatagcattctttctcactctgctactatatctgatccttcatttctttctcaccattaattttgcataccgaattttaaatagaaaattgatggcat |
21401967 |
T |
|
| Q |
101 |
ggctttcttgtaggtgacctattttcttgtattttacccgcacaatttt---gtttttt-----cttatacttgacgtttggaatgttattacataaaca |
192 |
Q |
| |
|
|||||||||||| |||||| | |||||||||| | |||||||| ||||||| ||||||| ||||||||| |||||| ||||||||||| |
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|
| T |
21401968 |
ggctttcttgtacgtgacc-----ttttgtattttaatggtacaatttttaagtttttttattccttatacgtgacgtttgaaatgttgttacataaaca |
21402062 |
T |
|
| Q |
193 |
taatccatgatcctttgctaaagagatcatctttcttatcaatccaattggctattacttctaaatatctatcaatcca |
271 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||| || |||||||||| |
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|
| T |
21402063 |
gcatccatgatcc---gctaaagagacagtctttcttatcaatccaattagctattatctctaattagttatcaatcca |
21402138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 53239658 - 53239386
Alignment:
| Q |
1 |
ttaataacattctttctcactcagatactatatatgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaatttgatggcat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
53239658 |
ttaataacattcttattcactctgatactatatctgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaaattgatggcat |
53239559 |
T |
|
| Q |
101 |
ggctttcttgtaggtgacctattttcttgtattttacccgcacaattttgttttttcttatacttgacgtttggaatgttattacataaacataatccat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53239558 |
ggctttcttgcaggtgacctattttcttgtattttacccgcacaattttgttttttcttatacttgacgtttggaatgttgttacataaacataatccat |
53239459 |
T |
|
| Q |
201 |
gatcctttgctaaagagatcatctttcttatcaatccaattggctattacttctaaatatctatcaatccatg |
273 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53239458 |
gatcctttgctaaagagaccatcttttttatcaatccaattggctattacttctaaatatctatcaatccatg |
53239386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 35 - 269
Target Start/End: Complemental strand, 33427089 - 33426851
Alignment:
| Q |
35 |
tgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaat-ttgatggcatggctttcttgtaggtgacctatttt-cttgtat |
132 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||| |||| ||||||| |
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| T |
33427089 |
tgttccttcgtttctttctcaccattaattttgcttactgaattttaattgaaaaaattgatggcatggctttcttatacgtgacctttttttcttgtat |
33426990 |
T |
|
| Q |
133 |
tttacccgcacaatttt--gttttttcttatacttgacgtttggaatgttattacataaacataatccatgatcctttgctaaagagatcatctttctta |
230 |
Q |
| |
|
||||| | |||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
33426989 |
tttactggtacaattttatgttttttcttatacttgatgtttggaatgttgtttcataaacataatccataatcctttgctaaagaggtcatctttctta |
33426890 |
T |
|
| Q |
231 |
tcaatccaattggctattacttctaaatatctatcaatc |
269 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||| |
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|
| T |
33426889 |
tcaatccaattacctattacttctaattagctatcaatc |
33426851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 47815023 - 47815230
Alignment:
| Q |
35 |
tgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaat-ttgatggcatggctttcttgtaggtgacctattttcttgtatt |
133 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||| || ||||||| |||||||||||| |
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|
| T |
47815023 |
tgttccttcatttctttctcaccattaattttgcttactgaattttaattgaaaaaattgatg--atggctttcttatacgtgaccttttttcttgtatt |
47815120 |
T |
|
| Q |
134 |
ttacccgcacaatttt--gttttttcttatacttgacgtttggaatgttattacataaacataatccatgatcctttgctaaagagatcatctttcttat |
231 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
47815121 |
ttactggtacaattttatgttttttcttatacttgacatttgaaatgttgtttcataaacataatccataatcctttgctaaagatgtcatctttcttat |
47815220 |
T |
|
| Q |
232 |
caatccaatt |
241 |
Q |
| |
|
|||||||||| |
|
|
| T |
47815221 |
caatccaatt |
47815230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 37503089 - 37503146
Alignment:
| Q |
76 |
attttaattgaaaatttgatggcatggctttcttgtaggtgacctattttcttgtatttt |
135 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
37503089 |
attttaaatggaaaattgatggcatggctttcttgt--gtgaccttttttcttgtatttt |
37503146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 34872422 - 34872557
Alignment:
| Q |
1 |
ttaataacattctttctcactcagatactatatatgttccttcgtttctttctcaccattatttttgcttaatgaattttaattgaaaatttgatggcat |
100 |
Q |
| |
|
|||||||||||||||||| || || || |||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||| |||||||||| |
|
|
| T |
34872422 |
ttaataacattctttctctctaaggtattatatatgttccttt-tttctttctcaccattaattttgtttactgaattttaattggaaaattgatggcat |
34872520 |
T |
|
| Q |
101 |
ggctttct-tgtaggtgacctattttcttgtatttta |
136 |
Q |
| |
|
|||||| | |||| ||||||| |||||| |||||||| |
|
|
| T |
34872521 |
ggctttgtgtgtacgtgaccttttttctagtatttta |
34872557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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