View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7183_low_7 (Length: 290)
Name: NF7183_low_7
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7183_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 42467732 - 42468030
Alignment:
| Q |
13 |
acctgtgtcctgatctacacgcataagccaaaggatagagatacaaatttgtttgtgcaagatgt---------------------aacgagtgaattgt |
91 |
Q |
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| T |
42467732 |
acctgtgtcctgatctacacgcataaaccaaaggatagagatacaaatttgtttgtgcaagatgtgtttcttgcactctaagagagaacgagtgaattgt |
42467831 |
T |
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| Q |
92 |
attgattatgaaaagtgaatgaatgaatacaagtgatacaattacaagtatttatagacttttctaactgtttgggaatcgaatttcctccgcacaacct |
191 |
Q |
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| T |
42467832 |
attgattatgaaaagtgaattaatgaatacaagtgatacaattacaagtatttatagacttttctaactgtttgggaatcgaatttcctccacacaacct |
42467931 |
T |
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| Q |
192 |
tcatataataaagtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatcatggcatcttattcttatagcgagttttctat |
290 |
Q |
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| T |
42467932 |
tcatataataaagtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatcatggcatcttattcttatagcgagttttctat |
42468030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 49100222 - 49100111
Alignment:
| Q |
159 |
ctgtttgggaatcgaatttcctccgcacaaccttcatataataaagtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatc |
258 |
Q |
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| T |
49100222 |
ctgtttgggaattgattttgctccccacaaccatcaaataataaagcaatttagtctcattattttgttttccttttgaatcactaaagttggttaaatc |
49100123 |
T |
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| Q |
259 |
atggcatcttat |
270 |
Q |
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| T |
49100122 |
atggcatcttat |
49100111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 1351743 - 1351820
Alignment:
| Q |
81 |
gagtgaattgtattgattatgaaaagtgaatgaatgaatacaagtgatacaattacaagtatttatagacttttctaa |
158 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||||| |
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| T |
1351743 |
gagtgaattatattgattatgaaaactgaatgaatgaatacatgggatacaattacaagtatttaaagacttttctaa |
1351820 |
T |
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