View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7183_low_8 (Length: 267)

Name: NF7183_low_8
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7183_low_8
NF7183_low_8
[»] chr8 (10 HSPs)
chr8 (24-155)||(15076176-15076324)
chr8 (25-155)||(15066224-15066371)
chr8 (24-110)||(15052018-15052104)
chr8 (125-255)||(15169236-15169363)
chr8 (131-255)||(15172057-15172178)
chr8 (185-255)||(15076372-15076439)
chr8 (109-155)||(15215072-15215118)
chr8 (109-152)||(15052120-15052163)
chr8 (127-166)||(4507071-4507110)
chr8 (169-255)||(4506967-4507053)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 15076176 - 15076324
Alignment:
Q  24 atactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctcct--------------- 108  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||                   
T  15076176 atactggtatcatgctataaataatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatggcttcaaca 15076275  T
Q  109 --tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa 155  Q
      ||||||| |||||||||||||||||||||||||||||||||||||||    
T  15076276 gatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa 15076324  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 15066224 - 15066371
Alignment:
Q  25 tactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctcct---------------- 108  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||                    
T  15066224 tactggcatcgtgctataaataatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatggcttcaacag 15066323  T
Q  109 -tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa 155  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||    
T  15066324 atctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa 15066371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 15052018 - 15052104
Alignment:
Q  24 atactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctccttc 110  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  15052018 atactggtatcgtgctataaataatagctggttattaacacaattttcaagataacgaaaattgcaactagtgttgtgttctccttc 15052104  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 15169363 - 15169236
Alignment:
Q  125 gaagaccaatcaagggatggacaagaaacaagccaacaagactgtaagcaggtgatcctctcacttcctaaagaaaatgggtggggattgtcccaaaatt 224  Q
    ||||| ||||||| |||||||||||||  || ||||||||||  |||||||||||||||||||||||||||||||||||  |||  ||||||||||||||    
T  15169363 gaagagcaatcaaaggatggacaagaagaaaaccaacaagacaataagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatt 15169264  T
Q  225 tatatttgtttcaatgtttttgatgtccatc 255  Q
    |||||   |||||||||||||| ||||||||    
T  15169263 tatat---tttcaatgtttttggtgtccatc 15169236  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 131 - 255
Target Start/End: Complemental strand, 15172178 - 15172057
Alignment:
Q  131 caatcaagggatggacaagaaacaagccaacaagactgtaagcaggtgatcctctcacttcctaaagaaaatgggtggggattgtcccaaaatttatatt 230  Q
    ||||||| ||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||  |||  ||||||||||||| |||||     
T  15172178 caatcaaaggatggacaagaagcaagccaacaagacaacaagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatgtatat- 15172080  T
Q  231 tgtttcaatgtttttgatgtccatc 255  Q
      |||||||||||||| ||||||||    
T  15172079 --tttcaatgtttttggtgtccatc 15172057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 15076372 - 15076439
Alignment:
Q  185 tcacttcctaaagaaaatgggtggggattgtcccaaaatttatatttgtttcaatgtttttgatgtccatc 255  Q
    ||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||| ||||||||    
T  15076372 tcacttcctaaagaaaatgggtggggattgtcccaaaatgtatat---tttcaatgtttttggtgtccatc 15076439  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 15215118 - 15215072
Alignment:
Q  109 tctcacacatatgaaagaagaccaatcaagggatggacaagaaacaa 155  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  15215118 tctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaa 15215072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 15052120 - 15052163
Alignment:
Q  109 tctcacacatatgaaagaagaccaatcaagggatggacaagaaa 152  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  15052120 tctcaaacatatgaaagaagaccaatcaagggatggacaagaaa 15052163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 4507110 - 4507071
Alignment:
Q  127 agaccaatcaagggatggacaagaaacaagccaacaagac 166  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  4507110 agaccaatcaagggatggacaagaagcatgccaacaagac 4507071  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 4507053 - 4506967
Alignment:
Q  169 taagcaggtgatcctctcacttcctaaagaaaatgggtggggattgtcccaaaatttatatttgtttcaatgtttttgatgtccatc 255  Q
    ||||||| | |||||||||||||||| || ||| ||||||||    ||||||| ||| ||||| |||||| ||||||| ||||||||    
T  4507053 taagcagttaatcctctcacttcctagagtaaaagggtggggggcatcccaaattttttatttttttcaaggtttttggtgtccatc 4506967  T

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