View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7183_low_9 (Length: 244)

Name: NF7183_low_9
Description: NF7183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7183_low_9
NF7183_low_9
[»] chr7 (15 HSPs)
chr7 (1-225)||(22840297-22840521)
chr7 (14-203)||(22876174-22876363)
chr7 (14-203)||(22809902-22810091)
chr7 (9-230)||(22880817-22881038)
chr7 (14-203)||(22805567-22805756)
chr7 (1-230)||(22842409-22842638)
chr7 (14-203)||(22898521-22898710)
chr7 (14-230)||(22889550-22889760)
chr7 (25-204)||(22815296-22815475)
chr7 (9-230)||(22858672-22858887)
chr7 (14-203)||(22894202-22894391)
chr7 (10-203)||(22831285-22831478)
chr7 (70-204)||(22913982-22914116)
chr7 (8-98)||(22885844-22885932)
chr7 (166-212)||(22885937-22885983)
[»] chr1 (1 HSPs)
chr1 (14-203)||(21150267-21150456)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 22840297 - 22840521
Alignment:
Q  1 ggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagctt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22840297 ggatatgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaactataggatttggatagaaagctt 22840396  T
Q  101 gtcctttttcatgtttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccatt 200  Q
    |||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  22840397 gtcctttttcttgttttgtatcattggtgagtcttagtaagccagttgaggctaactcagcggtaccatcaagatataaatttgatgattggaatccatt 22840496  T
Q  201 atatttatagatgaaactgttgtct 225  Q
    |||||||||||||||||||||||||    
T  22840497 atatttatagatgaaactgttgtct 22840521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 22876174 - 22876363
Alignment:
Q  14 ttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttttcatg 113  Q
    |||||| ||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||||||||||| | |||||||||||||     
T  22876174 ttatggcaaatacaaaagtagttgagaaagaagacacacttccattggaagtgtttttgaaaactataggatttggatagaaaccatgtcctttttcata 22876273  T
Q  114 tttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattata 203  Q
    ||  ||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  22876274 ttctgtatcattggtgagttttagtaagccatttgaggttaactcagcaataccatcaagatataaatttgatgattggaatccattata 22876363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 22809902 - 22810091
Alignment:
Q  14 ttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttttcatg 113  Q
    |||||| ||||||||||||||||||||||||||| |||||| | |||  ||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  22809902 ttatggcaaatacaaaagtagttgagaaagaagatacactttcactgatagtgtttttgaaaactacaggatttggatagaaagcatgtcctttttcatg 22810001  T
Q  114 tttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattata 203  Q
    ||  |||||||||||||||||||||||||||| || ||||||||||||  |||||||||||||||| | |||||||||||| ||||||||    
T  22810002 ttctgtatcattggtgagtcttagtaagccatctggggttaactcagcaataccatcaagatataaatgtgatgattggaaaccattata 22810091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 22880817 - 22881038
Alignment:
Q  9 agattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttt 108  Q
    |||||| |||| ||||||||||||||||||||||||| | |||||| |  ||||||||||||||||||| |||||||||||||||||||| | ||||||     
T  22880817 agatttgatggcaaatacaaaagtagttgagaaagaatacacactttcattggaagtgtttttgaaaactataggatttggatagaaagcatatcctttg 22880916  T
Q  109 tcatgtttc-gtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattatattta 207  Q
     | | |||| || |||||||||||||||||||||||||||||| ||| || |||  |||||||||||||||| | |||||| ||||||||||| ||||||    
T  22880917 gc-tctttctgtgtcattggtgagtcttagtaagccatttgagtttaccttagcaataccatcaagatataaatgtgatgaatggaatccattgtattta 22881015  T
Q  208 tagatgaaactgttgtcttcact 230  Q
    |||||||||||||| ||||||||    
T  22881016 tagatgaaactgttttcttcact 22881038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 22805567 - 22805756
Alignment:
Q  14 ttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttttcatg 113  Q
    |||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| || ||||||||||||||||| || ||| || | ||    
T  22805567 ttatggcaaatacaaaagtagttgagaaagaagacacactttcactggaagtgtttttgaaaactattggatttggatagaaagcatgacctattacttg 22805666  T
Q  114 tttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattata 203  Q
    ||  |||||||||||||||||||||| ||||| |||||||||||||||   ||||||||||||||| | |||||||||||||||||||||    
T  22805667 ttctgtatcattggtgagtcttagtatgccatctgaggttaactcagcaaaaccatcaagatataaatgtgatgattggaatccattata 22805756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 22842409 - 22842638
Alignment:
Q  1 ggatctgaagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagctt 100  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||| | || ||||||||||||||||| || || |||||||| ||||| |    
T  22842409 ggatctggagattttatggcaaataaaaaagtagttgagaaagaagacacactttcactagaagtgtttttgaaaactattggttttggatataaagcat 22842508  T
Q  101 gtcctttttcatgtttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccatt 200  Q
    | ||||| |  ||||| |||||||||||||||||| ||||||||  |||||||||||||||  ||||||||||||| || |   |||||||||||||  |    
T  22842509 gacctttgtattgttttgtatcattggtgagtcttggtaagccacctgaggttaactcagcaataccatcaagatacaaatgaaatgattggaatcctct 22842608  T
Q  201 atatttatagatgaaactgttgtcttcact 230  Q
    ||  ||||||||||||||||||||||||||    
T  22842609 attattatagatgaaactgttgtcttcact 22842638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 22898521 - 22898710
Alignment:
Q  14 ttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttttcatg 113  Q
    |||||| ||| ||||||||||||||||||||||||||||||||  | |||||||| |||||||| |||||||||||||||||||| ||| ||||||| ||    
T  22898521 ttatggcaaacacaaaagtagttgagaaagaagaaacacttccattagaagtgttcttgaaaactataggatttggatagaaagcatgtgctttttcttg 22898620  T
Q  114 tttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattata 203  Q
     || ||||||||||||||||| ||||||||||| |||||||| | |||  |||||||||||||||| | |||||||||||| ||||||||    
T  22898621 cttggtatcattggtgagtctaagtaagccattggaggttaaattagcaataccatcaagatataaatgtgatgattggaaaccattata 22898710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 22889550 - 22889760
Alignment:
Q  14 ttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttttcatg 113  Q
    |||||| ||||| ||||||||||||||||||||| || ||| | |||||||||||||||||||| || ||||||||||||||| | |||||||| || |     
T  22889550 ttatggcaaataaaaaagtagttgagaaagaagacacgctttcactggaagtgtttttgaaaactattggatttggatagaaaccatgtcctttgtc-tc 22889648  T
Q  114 tttc-gtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattatatttatagat 212  Q
    |||| ||||||||||||||| |||||||||||||||  |||||||||||  |||||||||||||||| | ||||||||||||||||||||||      ||    
T  22889649 tttctgtatcattggtgagttttagtaagccatttgtagttaactcagcaataccatcaagatataaatgtgatgattggaatccattatat------at 22889742  T
Q  213 gaaactgttgtcttcact 230  Q
    ||||||||||||||||||    
T  22889743 gaaactgttgtcttcact 22889760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 22815296 - 22815475
Alignment:
Q  25 acaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttttcatgtttc-gtatca 123  Q
    ||||||||||||||||||||||| |||||| |  ||||||||||||||||||| |||||||||||||||||||| | ||||||  | | |||| ||||||    
T  22815296 acaaaagtagttgagaaagaagacacactttcattggaagtgtttttgaaaactataggatttggatagaaagcatatcctttggc-tctttctgtatca 22815394  T
Q  124 ttggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattatat 204  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||| ||| | ||||||||||||||||||||||    
T  22815395 ttggtgagttttagtaagccatttgaggttaactcagcaataccatcaagatttaaatgtgatgattggaatccattatat 22815475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 22858672 - 22858887
Alignment:
Q  9 agattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttt 108  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||| || | || ||||||||||||||||| |||||||||||||||||||| ||| || |     
T  22858672 agattttatggcaaataaaaaagtagttgagaaagaagacacagtttcactagaagtgtttttgaaaactataggatttggatagaaagcatgtgctgta 22858771  T
Q  109 tcatgtttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattatatttat 208  Q
    || ||     |||||||||||||||||||||||||| |||| |||||||||||  |||||||||||||||| | |||||||||||||||      |||||    
T  22858772 tcttgcccgatatcattggtgagtcttagtaagccagttgaagttaactcagcaataccatcaagatataaatgtgatgattggaatcc------tttat 22858865  T
Q  209 agatgaaactgttgtcttcact 230  Q
    ||||||||| ||||||||||||    
T  22858866 agatgaaaccgttgtcttcact 22858887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 22894202 - 22894391
Alignment:
Q  14 ttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttttcatg 113  Q
    |||||| ||||||||||||||||||||| ||||||||||||||  |||||||||| || ||||| ||||| |||||||||||||| ||| ||||||| ||    
T  22894202 ttatggcaaatacaaaagtagttgagaatgaagaaacacttccattggaagtgttcttcaaaactatagggtttggatagaaagcatgtgctttttcttg 22894301  T
Q  114 tttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattata 203  Q
    ||| || |||||||||||||||||||||||||| |||||||| | |||  ||||||||||||| || |  |||||||||||  |||||||    
T  22894302 tttggtgtcattggtgagtcttagtaagccattggaggttaaattagcaataccatcaagatacaaatgagatgattggaaatcattata 22894391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 22831285 - 22831478
Alignment:
Q  10 gattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtccttttt 109  Q
    |||||||||| |||||||||||||||||||||||| || |||||| |  | ||||||||||| ||||| ||| |||||||||||||||| | | || | |    
T  22831285 gattttatggtaaatacaaaagtagttgagaaagatgacacacttgcattcgaagtgtttttaaaaactatatgatttggatagaaagcatatgctgtat 22831384  T
Q  110 catgtttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattata 203  Q
    |  |    |||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||||| | |||||||||||| ||||||||    
T  22831385 ctggcccggtatcattggtgagtcttagtaagccatctgaagttaactcagcaataccatcaagatataaatgtgatgattggaaaccattata 22831478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 22913982 - 22914116
Alignment:
Q  70 ttgaaaacaataggatttggatagaaagcttgtcctttttcatgtttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccat 169  Q
    |||||||| ||||| |||||||||||||| || || ||||  ||| | | ||||||||| | ||||||||| |||||||||||||| |||||   |||||    
T  22913982 ttgaaaactatagggtttggatagaaagcatgacccttttgttgtcttgaatcattggttaatcttagtaaaccatttgaggttaattcagcaacaccat 22914081  T
Q  170 caagatataagtttgatgattggaatccattatat 204  Q
    |||||||||| | |||||||| ||| |||||||||    
T  22914082 caagatataaatgtgatgatttgaaaccattatat 22914116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 22885844 - 22885932
Alignment:
Q  8 aagattttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagc 98  Q
    |||||||||| | ||||| | || |||||||||||||||| |||||| | |||  ||||||||||||||| ||||||||||||||||||||    
T  22885844 aagattttatagcaaataaagaattagttgagaaagaagacacactttcactg--agtgtttttgaaaactataggatttggatagaaagc 22885932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 22885937 - 22885983
Alignment:
Q  166 ccatcaagatataagtttgatgattggaatccattatatttatagat 212  Q
    |||||||||||||| | |||||||||||||||| | |||||||||||    
T  22885937 ccatcaagatataaatgtgatgattggaatccactttatttatagat 22885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 21150456 - 21150267
Alignment:
Q  14 ttatggaaaatacaaaagtagttgagaaagaagaaacacttccgctggaagtgtttttgaaaacaataggatttggatagaaagcttgtcctttttcatg 113  Q
    |||||| |||||||||||||||||| |||||| | |||||| ||| ||||||||||| |||||| |||||||||||||||||||| || ||| |||||||    
T  21150456 ttatggcaaatacaaaagtagttgaaaaagaaaacacactttcgccggaagtgttttcgaaaactataggatttggatagaaagcatgccctatttcatg 21150357  T
Q  114 tttcgtatcattggtgagtcttagtaagccatttgaggttaactcagctgtaccatcaagatataagtttgatgattggaatccattata 203  Q
     |  |||||| | |||||||||||||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||||||||||    
T  21150356 atctgtatcactagtgagtcttagtaagccatttgaggttaactcagcaataccatcaagatataaatgtgatgattggaatccattata 21150267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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