View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7184_high_3 (Length: 453)
Name: NF7184_high_3
Description: NF7184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7184_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 49684534 - 49684106
Alignment:
| Q |
18 |
ctaaatatgaatattaacaactttaattatgcaattggagaaaacatagttaaggaatatgctaatatataaattttgaagttcagtatccagttttgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
49684534 |
ctaaatatgaatattaacaactttaattatgcaattagagaaaacatagttaaggaatatgctaatatgtaaatttcgaagttcagtatccagttttgaa |
49684435 |
T |
|
| Q |
118 |
ttggtcaattcgactcaaagaattatcagtcaggaacttgcatccacacaacaagataaatcaataaagaaaaaacaaccaattttcaagatatgtcaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49684434 |
ttggtcaattcgactcaaagaattatcagtcaggaacttgcatccacacaacaagataaatcaataaagaaaaaacaaccaattttcaagatatgtcaca |
49684335 |
T |
|
| Q |
218 |
ttactaatagagtatacataagtttttggctaacctttggatcctatgacaagtgctgatgaaatcttatcattatctactgaaatattaaaggttcaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49684334 |
ttactaatagagtatacataagtttttggctaacctttggatcctatgacaagtgctgatgaaatcttatcattatctactgaaatattaaaggttcaat |
49684235 |
T |
|
| Q |
318 |
ttactagtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagctgtaggaggtgtta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49684234 |
ttactagtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagctgtaggaggtgtta |
49684135 |
T |
|
| Q |
418 |
acttcttattcttcaacaatttcatctca |
446 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49684134 |
acttcttattcttcaacaatttcatctca |
49684106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 323 - 446
Target Start/End: Complemental strand, 49676198 - 49676075
Alignment:
| Q |
323 |
agtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagctgtaggaggtgttaacttc |
422 |
Q |
| |
|
||||| |||||| || ||||| || || ||||| ||||||||||||| |||||||||||||| | ||||||| |||| | | ||||||| |||||||| |
|
|
| T |
49676198 |
agtgttatattaaatccggcttgctgactgaccgctgacattagaagtagtcgattcactatcccatttatccgtcacacccgtaggagacgttaacttt |
49676099 |
T |
|
| Q |
423 |
ttattcttcaacaatttcatctca |
446 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49676098 |
ttattcttcaacaatttcatctca |
49676075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 20059584 - 20059440
Alignment:
| Q |
45 |
tatgcaattggagaaaacatagttaaggaa-tatgctaatatataaattttgaagttcagtatccagttttgaattggtcaattcgactcaaagaattat |
143 |
Q |
| |
|
|||||||||||||||| ||| || | ||| |||||||| || | ||||||||||||||||||||||| |||||| |||| || |||||||||||| |
|
|
| T |
20059584 |
tatgcaattggagaaagcatggtaagtgaaatatgctaacatgttaattttgaagttcagtatccagtcttgaatcggtccat-----tcaaagaattat |
20059490 |
T |
|
| Q |
144 |
cagtcaggaacttgcatcc--acacaacaagataaatcaataaagaaaaa |
191 |
Q |
| |
|
|||||| ||| ||||||| ||| || ||| |||||||||||||||||| |
|
|
| T |
20059489 |
tagtcagaaacctgcatccatacaaaaaaagttaaatcaataaagaaaaa |
20059440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University