View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7184_high_9 (Length: 301)
Name: NF7184_high_9
Description: NF7184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7184_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 47 - 286
Target Start/End: Original strand, 42179811 - 42180050
Alignment:
| Q |
47 |
ttttaatttgaatcggtttggatttgaacaacctagttatagataatcaaagtttgataaaacaaaccaaacctgtcttgtctgtctctaagttttctta |
146 |
Q |
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| T |
42179811 |
ttttaatttgaatcggtttggatttgaacaacttagttatagataatcaaagtttgataaaacaaaccaaacctgtcttgtctgtctctaagttttctta |
42179910 |
T |
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| Q |
147 |
gaaacttctcattgtcttcttcaacaatcttaaggatgctatccaacaagagttttctgtcatgtaaaccaagtttcgcaacatcaacttcatcatgccc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42179911 |
gaaacttctcattgtcttcttcaacaatcttaaggatgctatccaacaagagttttttgtcatgtaaaccaagtttcgcaacatcaacttcatcatgccc |
42180010 |
T |
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| Q |
247 |
aacttttccattttcatcaacgtgtttcattacacctttt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42180011 |
aacttttccattttcatcaacgtgtttcattacacctttt |
42180050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 114 - 286
Target Start/End: Original strand, 42146609 - 42146781
Alignment:
| Q |
114 |
caaacctgtcttgtctgtctctaagttttcttagaaacttctcattgtcttcttcaacaatcttaaggatgctatccaacaagagttttctgtcatgtaa |
213 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
42146609 |
caaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgctatccaacaagagttttttgtcatgaaa |
42146708 |
T |
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| Q |
214 |
accaagtttcgcaacatcaacttcatcatgcccaacttttccattttcatcaacgtgtttcattacacctttt |
286 |
Q |
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| T |
42146709 |
accaagtttcgcaacatcaacttcatcatgcacaacttttccattttcatcaacgtgttttattacacctttt |
42146781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 114 - 286
Target Start/End: Original strand, 42158904 - 42159076
Alignment:
| Q |
114 |
caaacctgtcttgtctgtctctaagttttcttagaaacttctcattgtcttcttcaacaatcttaaggatgctatccaacaagagttttctgtcatgtaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||| || | |||||||| |
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| T |
42158904 |
caaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatccaacaagatcttcttatcatgtaa |
42159003 |
T |
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| Q |
214 |
accaagtttcgcaacatcaacttcatcatgcccaacttttccattttcatcaacgtgtttcattacacctttt |
286 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| || |||| |||||||||| |
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| T |
42159004 |
accaagtttagcaacatcaacttcatcatgcacaacttttccattttcaccaacatgcttcactacacctttt |
42159076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 40619850 - 40619887
Alignment:
| Q |
39 |
gtttccggttttaatttgaatcggtttggatttgaaca |
76 |
Q |
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| T |
40619850 |
gtttccggttttaatttggatcggtttggatttgaaca |
40619887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 12291511 - 12291543
Alignment:
| Q |
44 |
cggttttaatttgaatcggtttggatttgaaca |
76 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
12291511 |
cggttttattttgaatcggtttggatttgaaca |
12291543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 7004637 - 7004605
Alignment:
| Q |
44 |
cggttttaatttgaatcggtttggatttgaaca |
76 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
7004637 |
cggttttaatttgaatcgatttggatttgaaca |
7004605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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