View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7184_low_11 (Length: 243)
Name: NF7184_low_11
Description: NF7184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7184_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 42031196 - 42031398
Alignment:
| Q |
22 |
actaaacgatttgatttcttaataataaatgaagaaatttattgaaaaatcagtaaaaacaaagtacaaaaggtatttatccttgaagaatataagtata |
121 |
Q |
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| T |
42031196 |
actaaacgatttaatttcttaataataaatgaagaaatttattgaaaaatcagtaaaaacaaagtacaaaaggtatttatccttgaagaatataagtata |
42031295 |
T |
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| Q |
122 |
aaaagtactccattcattaaaataaaataagaacgcacaccccaaactcataccatatcatctaagaatacatctaatggagtagtgagccattcgtaga |
221 |
Q |
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|| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42031296 |
aagagtactccatccattaaaataaaataagaacgcacatcccaaactcataccatatcatctaagaataaatctaatggagtagtgagccattcgtaga |
42031395 |
T |
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| Q |
222 |
ata |
224 |
Q |
| |
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||| |
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| T |
42031396 |
ata |
42031398 |
T |
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