View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7184_low_2 (Length: 548)
Name: NF7184_low_2
Description: NF7184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7184_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 94 - 539
Target Start/End: Original strand, 35021701 - 35022146
Alignment:
| Q |
94 |
tgcaaaatctcaaactcactcacctccgtctcgaagaacccgacccatccataatccgttctcttctctacaccaacatctccctcttcctcacaatccc |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021701 |
tgcaaaatctcaaactcactcacctccgtctcgaagaacccgacccatccataatccgttctcttctctacaccaacatctccctcttcctcacaatccc |
35021800 |
T |
|
| Q |
194 |
caactacctcgtcactcacatcgctactaaccgctccatcgcacgtgcatggatctacactcacgtgcttcccttctacccacgcgccaaaatcaccacc |
293 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021801 |
caactacctcgtcactcccatcgccactaaccgctccatcgcacgtgcatggatctacactcacgtgcttcccttctacccacgcgccaaaatcaccacc |
35021900 |
T |
|
| Q |
294 |
atctccgtcggtaacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggca |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35021901 |
atctccgtcggtaacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggta |
35022000 |
T |
|
| Q |
394 |
ttcgtaaaatctccgtttcaacttccttctccttcgtcaccgccgtaacttccccttttccaccttcctccgcctcgtttcaagaaattcccggcgttaa |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35022001 |
ttcgtaaaatctccgtttcaacttccttctccttcgtcaccgccgtaacttccccttttccaccttcctccgccgcgtttcaagaaattcccggcgttaa |
35022100 |
T |
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| Q |
494 |
cctgatcggtccacttctccaattcctctccgatactaattcatct |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022101 |
cctgatcggtccacttctccaattcctctccgatactaattcatct |
35022146 |
T |
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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 42811575 - 42811487
Alignment:
| Q |
317 |
cgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggcattcgtaaaatct |
405 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
42811575 |
cgacgtttaccctgaatccatcaacaacctcctccccgccatctccaacgttcacatctcccttcacgacctcggcatccataaaatct |
42811487 |
T |
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