View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7184_low_4 (Length: 388)
Name: NF7184_low_4
Description: NF7184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7184_low_4 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 18098957 - 18098805
Alignment:
| Q |
18 |
accaatacaaccatattgaaattacatagaaattgaaatatcctcaccatacttcaatgcattttgtgttaattgaaatatcctcacttacttttatttg |
117 |
Q |
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| T |
18098957 |
accaatacaaccataatgaaattacatagaaattgaaatatcctcaccatacttcaatgcattttgtgttaattgaaatatcctcacttacttttatttg |
18098858 |
T |
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| Q |
118 |
ttnnnnnnnttgtacatacacatccccttccttgtgtaaatgacacatacacc |
170 |
Q |
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| T |
18098857 |
ctaaaaaaattgtacatacacatccccttccttgtgtaaatgacacatacacc |
18098805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 227 - 373
Target Start/End: Complemental strand, 18098735 - 18098589
Alignment:
| Q |
227 |
acaatgatagtctcaatcacaactactcctttagcttgtgctaattgagatatcaccaacctttgcctatcaaccacagccagtctagtgtcacccctgc |
326 |
Q |
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| T |
18098735 |
acaatgatagcctcaattaaaactattcccttagtttgtgctaattgagatctcaccaacctttgcctatcaaccacagccagtctagtgtcacccctgc |
18098636 |
T |
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| Q |
327 |
aaaaacacctccaagtagaaacaacaccaacaagtttcccaaggcat |
373 |
Q |
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| T |
18098635 |
aaaaatacctccaagtagaaacaacaccaacaggtttcccaaagcat |
18098589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 37856564 - 37856412
Alignment:
| Q |
18 |
accaatacaaccatattgaaattacatagaaattgaaatatcctcaccatacttcaatgcattttgtgttaattgaaatatcctcacttacttttatttg |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37856564 |
accaatacaaccataatgaaattacatagaaattgaaatatcctcaccatacttcaatgcattttgtgttaattgaaatatcctcacttacttttatttg |
37856465 |
T |
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| Q |
118 |
ttnnnnnnnttgtacatacacatccccttccttgtgtaaatgacacatacacc |
170 |
Q |
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| T |
37856464 |
ctaaaaaaattgtacatacacatccccttccttgtgtaaatgacacatacacc |
37856412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 227 - 373
Target Start/End: Complemental strand, 37856342 - 37856196
Alignment:
| Q |
227 |
acaatgatagtctcaatcacaactactcctttagcttgtgctaattgagatatcaccaacctttgcctatcaaccacagccagtctagtgtcacccctgc |
326 |
Q |
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| T |
37856342 |
acaatgatagcctcaattaaaactattcccttagtttgtgctaattgagatctcaccaacctttgcctatcaaccacagccagtctagtgtcacccctgc |
37856243 |
T |
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| Q |
327 |
aaaaacacctccaagtagaaacaacaccaacaagtttcccaaggcat |
373 |
Q |
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| T |
37856242 |
aaaaatacctccaagtagaaacaacaccaacaggtttcccaaagcat |
37856196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 373
Target Start/End: Original strand, 61999 - 62093
Alignment:
| Q |
279 |
tcaccaacctttgcctatcaaccacagccagtctagtgtcacccctgcaaaaacacctccaagtagaaacaacaccaacaagtttcccaaggcat |
373 |
Q |
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| T |
61999 |
tcaccatcctttacctattaaccataaccaatcaagtgttacccctgcaaaaatacctcctagaagaaacaacaccaagatatttcccaacgcat |
62093 |
T |
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