View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7184_low_5 (Length: 351)
Name: NF7184_low_5
Description: NF7184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7184_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 46215791 - 46215472
Alignment:
| Q |
19 |
agtgtaccgtagaagttcccgaatatatataccatttttgtttcttcaaaaagaaatatcaaatgactaacttattcacctttaaaatatgtatttttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46215791 |
agtgtaccgtagaagttcccgaatatatataccatttttgtttcttcaaaaa-aaatatcaaatgcctaacttattcacctttaaaatatgtatttttag |
46215693 |
T |
|
| Q |
119 |
ctactcaacaacaacaacgaaaaaccaatgggagaatctgctgattgcgttctcatcctgaatttgtggttcataatttggatgtgtcgatctgaatggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46215692 |
ctactcaacaacaacaacgaaaaaccaatgggagaatctgttgattgcgttctcatcttgaatttgtggttcataatttggatgtgtcgatctgaatggt |
46215593 |
T |
|
| Q |
219 |
cgttatttgcttttggaggtattgtggtcatgggagatgaagatgaaatattctctttgctttatgctgctaaattcatttttcatttttctttggtgat |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46215592 |
cgttatttgcttttggaggtattgtagtcatgggagatgaagatgaaatattctctttgc-ttatgctgctaaattcatttttcagttttctttggtgat |
46215494 |
T |
|
| Q |
319 |
gaaagcgaaacaatggagtatt |
340 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46215493 |
gaaagcgaaacaatggagtatt |
46215472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 301
Target Start/End: Complemental strand, 46219971 - 46219823
Alignment:
| Q |
160 |
tgattgcgttctcatcctgaatttgtggttcataatttggatgtgtcgatctgaatggtcgttat-ttgcttttggaggtattgtggtc------atggg |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||| | | | |||||||| ||||||||| ||| |||| |
|
|
| T |
46219971 |
tgattgcgttctcatcctaaatttgtggttgttaatttgtatgtgtcattctgaatggttgctctgctgcttttgaaggtattgtagtcgtagcagtggg |
46219872 |
T |
|
| Q |
253 |
agatgaagatgaaata-ttctctttgctttatgctgctaaattcattttt |
301 |
Q |
| |
|
||||||| |||||||| ||||||||| |||| |||| ||||||||||||| |
|
|
| T |
46219871 |
agatgaaaatgaaatatttctctttg-tttaagctgataaattcattttt |
46219823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 3938707 - 3938677
Alignment:
| Q |
40 |
aatatatataccatttttgtttcttcaaaaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3938707 |
aatatatataccatttttgtttcttcaaaaa |
3938677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 26658465 - 26658433
Alignment:
| Q |
43 |
atatataccatttttgtttcttcaaaaagaaat |
75 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
26658465 |
atatataccatttttgtttcttcaaaaaaaaat |
26658433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University