View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7184_low_6 (Length: 347)
Name: NF7184_low_6
Description: NF7184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7184_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 29507396 - 29507063
Alignment:
| Q |
1 |
gttcaaaatctggactcaaggctaaattgcagaattggggtcaatacatttcagcactagcgaccttctggctgtcattgttcagcctcgatgtttcctg |
100 |
Q |
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| T |
29507396 |
gttcaaaatctggactcaaggctaaattgcagaattggggtcaatacatttcagcactagcgaccttctggctgtcattgttcagcctcgatgtttcctg |
29507297 |
T |
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| Q |
101 |
tttcagggaaaatgtgaacatgtaacttgtagttgtaggtggcatttgtatgaatgtttttctttattatagatggtttaaaatatatgnnnnnnngttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29507296 |
tttcagggaaaatgtgaacatgtaacttgtagttgtaggtggcatttgtatgaatgtttttctttattatagatggtttaaaatatataaaaaaaagttc |
29507197 |
T |
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| Q |
201 |
attcaattgctaattttaacttttgaatatgccaatgagttatggtttagaaaaaccttcgttttctacttaaaatctccatcagctattatattgctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29507196 |
attcaattgctaattttaacttttgaatatgccaatgagttatggtttag-aaaaccttcgttttctacttaaaatctccatcagctattatattgctta |
29507098 |
T |
|
| Q |
301 |
aactgttctcaaaatagtgtctacctctttgatgt |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29507097 |
aactgttctcaaaatagtgtctacctctttgatgt |
29507063 |
T |
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