View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7184_low_7 (Length: 343)
Name: NF7184_low_7
Description: NF7184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7184_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 44555570 - 44555306
Alignment:
| Q |
13 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44555570 |
aatatctgaatgataagaaaattggctgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttat |
44555471 |
T |
|
| Q |
113 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44555470 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacag |
44555371 |
T |
|
| Q |
213 |
atacatcaagttgtaaagcaaatttgatcatgatgaggccaagcttcttattttatcttaatttt |
277 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44555370 |
atacaccaagttgtaaagcaaatttgatcatgatgaggccaagcttcttattttatcttaatttt |
44555306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 44544928 - 44544664
Alignment:
| Q |
13 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
112 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44544928 |
aatatctgaatgataaaaaaattgtttgtaagcgtgcattggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttat |
44544829 |
T |
|
| Q |
113 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacag |
212 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||| || |||| |||||||||||| |||||||||||| |||||||||| || |
|
|
| T |
44544828 |
gattgaaatatgcaattgtgatagtctcccagttattcctctagctggtgagattgttaattcatgctctagaatcaaccttgagactatgccacaaaag |
44544729 |
T |
|
| Q |
213 |
atacatcaagttgtaaagcaaatttgatcatgatgaggccaagcttcttattttatcttaatttt |
277 |
Q |
| |
|
||||| ||| |||| | |||||| | |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44544728 |
atacaccaacctgtagaaaaaatttaaacatgatgaggccaaacttcttattttatcttaatttt |
44544664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 375982 - 376047
Alignment:
| Q |
65 |
tggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatatgcaattg |
130 |
Q |
| |
|
||||||| | || ||||||||||| |||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
375982 |
tggaattaaggttgatcaattgttctttcatgatccagatggatatatgattgaaatgtgcaattg |
376047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 51845919 - 51846187
Alignment:
| Q |
13 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
112 |
Q |
| |
|
||||| |||| |||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51845919 |
aatatttgaaggatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatcagttgttttttcatgacccagatggattcat |
51846018 |
T |
|
| Q |
113 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacag |
212 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||| || |||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
51846019 |
gattgagatatgcaattgtgatagtctccctgttattcctttagctggtgggatggttacattatgccctagactcaactttgagtctatgccacaacag |
51846118 |
T |
|
| Q |
213 |
atacatcaagttgtaaagcaaatttgatcat----gatgaggccaagcttcttattttatcttaatttt |
277 |
Q |
| |
|
||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51846119 |
atagaccaagttgcaaagcaaatttgatcatgctcgatgaggccaagcttcttattttatcttaatttt |
51846187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 2573272 - 2573366
Alignment:
| Q |
87 |
ttttttcatgacccagatggattcatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctc |
181 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| | | ||||||||||| |
|
|
| T |
2573272 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgctc |
2573366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University