View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7185_high_3 (Length: 263)
Name: NF7185_high_3
Description: NF7185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7185_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 31457650 - 31457904
Alignment:
| Q |
1 |
aatgacatatataaatcacattcaccaccacacagttacataattatttattaatgagaaaattaagaggctagttaaaaacaagtaatagctggatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31457650 |
aatgacatatataaatcacattcaccaccacacagttacatattaatttattaatgagaaaattaagaggctagttaaaaacaagtaatagctggatgaa |
31457749 |
T |
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| Q |
101 |
ttatagcactacttgttggccttgtcaacagaatgaagaccactaaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccac |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31457750 |
ttatagcactacttgttggccttgtcagcagaatgaagaccactaaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccac |
31457849 |
T |
|
| Q |
201 |
ctcccggtgctttcattgaatccccaccaccactgccaccggtggaccctttgct |
255 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31457850 |
ctccaggtgctttcattgaatccccaccaccactgccaccggtggaccctttgct |
31457904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 49085607 - 49085853
Alignment:
| Q |
7 |
atatataaatcacattcaccaccacacagttacataattatttattaatgagaaaattaagaggctagttaaaaacaagtaatagctggatgaattatag |
106 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
49085607 |
atatataaatcacattagccaccacacagttacatatttatttattaatgagaaaattaagaggccagttaaaaacaagtaatagctggatgaa--atag |
49085704 |
T |
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| Q |
107 |
cactacttgttggccttgtcaacagaatgaagaccactaaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccacctcccg |
206 |
Q |
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||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085705 |
cactacttgttggccttgtcagcagcatgaagaccaccaaaatagccttgtgggttgctttcaaatgcaccacgagatatgtatgatccaccacctcccg |
49085804 |
T |
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| Q |
207 |
gtgctttcattgaatccccaccaccactgccaccggtggaccctttgct |
255 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49085805 |
gtgctttcattgaatctccaccaccactgccaccggtggaccctttgct |
49085853 |
T |
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