View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7186_high_4 (Length: 503)

Name: NF7186_high_4
Description: NF7186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7186_high_4
NF7186_high_4
[»] chr2 (3 HSPs)
chr2 (1-486)||(12158089-12158574)
chr2 (262-403)||(12155498-12155639)
chr2 (1-184)||(30866856-30867040)
[»] chr1 (3 HSPs)
chr1 (1-237)||(4815270-4815507)
chr1 (1-178)||(23599565-23599743)
chr1 (1-263)||(13392394-13392649)
[»] chr5 (2 HSPs)
chr5 (1-237)||(29637886-29638123)
chr5 (60-164)||(1624138-1624243)
[»] chr3 (1 HSPs)
chr3 (1-237)||(676435-676672)
[»] chr4 (1 HSPs)
chr4 (1-154)||(41500848-41501002)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-43)||(251128-251170)
[»] chr7 (1 HSPs)
chr7 (97-184)||(19238332-19238419)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 12158574 - 12158089
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12158574 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagatcgtttgcttctcctcttccatcattaactggtttatcatcttt 12158475  T
Q  101 caacatttcaagaacatcagttacaaaaa-atacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgata 199  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||| |||||||    
T  12158474 caacatttcaagaacattagttacaaaactatacatcgatatcaaattcaccaaagttgtaaagtcaaaactccaacaaatatcactataacacttgata 12158375  T
Q  200 ttaatttctctgctcaaacctcttctactaacaatttcttaactctcaaatgcttccttaacacaggtgtatttgtgttacctatgagcacaagcaaata 299  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  12158374 ttaatttctctgttcaaacctcttccactaacaatttcttaactctcaaatgcttccttaacacaggtgcatttgtgttacctatgagcacaagaaaata 12158275  T
Q  300 cttgtcatgaaaacttcacacatggaagaaatcgacgtagaagacgttcttgttggtcctgacgcctacatatgatccacacagatgaagacacaaaatc 399  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||     
T  12158274 cttgtcatggaaacttcacacacggaagaaatcgacgtagaagatgttcttgtcggtcctaacgcctacatatgatccacacagatgaagacacaaaata 12158175  T
Q  400 tctaggtttnnnnnnnncgatcgaatggttctgcgttcaatttattttgtatcaggacttcacaaaattttcgttaacatctttgat 486  Q
    |||||||||        |||  ||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||||||||    
T  12158174 tctaggttt-acaaaaacgactgaatggttctgcgttcaatttattttgtaccaggacttcataaaattatggttaacatctttgat 12158089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 262 - 403
Target Start/End: Original strand, 12155498 - 12155639
Alignment:
Q  262 acaggtgtatttgtgttacctatgagcacaagcaaatacttgtcatgaaaacttcacacatggaagaaatcgacgtagaagacgttcttgttggtcctga 361  Q
    ||||||| | ||||||||||||  ||||||| |||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||  |||  |||    
T  12155498 acaggtgcacttgtgttacctacaagcacaaacaaatatttgtcatggaaacttcaaacacggaagaaatcgacgtagaagacgttcttgccggttttga 12155597  T
Q  362 cgcctacatatgatccacacagatgaagacacaaaatctcta 403  Q
     ||||||||| |||| ||||| ||||||||||||||||||||    
T  12155598 tgcctacataggatcaacacaaatgaagacacaaaatctcta 12155639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30866856 - 30867040
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatcttt 100  Q
    ||||||||||||| ||||||  ||| ||||||||||||||||||| || |||||||   |||||||| ||||||||||  ||||||     |||||||||    
T  30866856 ttttcatcaaatgtaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctcttccatatttaactaaaacatcatcttt 30866955  T
Q  101 caacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatca 184  Q
    |||||| | |||||||||| ||||| ||  ||||||||||||||||||||| ||||||  ||||| ||||||| ||||| |||||    
T  30866956 caacatattaagaacatcaattacagaactatacatcaatatcaaattcactaaagttccaaagtgagaactccaacgagtatca 30867040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4815507 - 4815270
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatcttt 100  Q
    |||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||| | |||||||| ||||||||||| |||| || |  ||||||| |    
T  4815507 ttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagactttttgcttcacctcttccatctttaattgatacatcatctct 4815408  T
Q  101 caacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgata 199  Q
    ||||||||||||||||||||||| | ||  ||||||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||| || ||||||| |||    
T  4815407 caacatttcaagaacatcagttatagaactatacatcaatatcaagttcaccaaagttgcaaagtgagaactccaacgagtatcatcagaacgcttcata 4815308  T
Q  200 ttaatttctctgctcaaacctcttctactaacaatttc 237  Q
    |||  ||||  | |||||||||||| ||||||||||||    
T  4815307 ttaggttcttggttcaaacctcttccactaacaatttc 4815270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 23599743 - 23599565
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatcttt 100  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||| || |||||||   ||| |||| ||||||||||| || ||||    |||||||||    
T  23599743 ttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccattttcttcacctcttccatctttgactgtaacatcatcttt 23599644  T
Q  101 caacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacga 178  Q
    |||||| | |||||||||| ||||| ||  |||||||||||||||||||||||||| |  ||||| ||||||| |||||    
T  23599643 caacatattaagaacatcaattacagaactatacatcaatatcaaattcaccaaagctccaaagtgagaactccaacga 23599565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 13392649 - 13392394
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatcttt 100  Q
    ||||||||||||| ||| || |||| ||||||||| |||||||||||||||||||| | |||||||  ||||||| ||  || ||   |  || ||||||    
T  13392649 ttttcatcaaatgtaatatgagtgcaaaatcaaaagtattcattagaattaaaagactatttgcttgacctcttctat--ttgaccaatacatgatcttt 13392552  T
Q  101 caacatttcaagaacatcagttacaaaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgatat 200  Q
     ||||||||||||| ||||||     || |||  |   ||||||| |||| ||||||| ||||| ||||||| ||| | |||||||| || |||| ||||    
T  13392551 taacatttcaagaatatcagt-----aacataactatttatcaaagtcacaaaagttgcaaagtgagaactccaacaagtatcaccagaaagcttcatat 13392457  T
Q  201 taatttctctgctcaaacctcttctactaacaatttcttaactctcaaatgcttccttaacac 263  Q
    || |||||    |||||||||||| ||| |||||||||  | |||| || | |||||||||||    
T  13392456 tagtttcttgattcaaacctcttccacttacaatttctccattctccaaagtttccttaacac 13392394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29638123 - 29637886
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatcttt 100  Q
    |||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||   |||||||| ||||||||||| |||| || |  ||||||| |    
T  29638123 ttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagaccttttgcttcacctcttccatctttaattgatacatcatctct 29638024  T
Q  101 caacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgata 199  Q
    ||||||||||||||||||||||| | ||  ||||||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||| || ||||||| |||    
T  29638023 caacatttcaagaacatcagttatagaactatacatcaatatcaagttcaccaaagttgcaaagtgagaactccaacgagtatcagcagaacgcttcata 29637924  T
Q  200 ttaatttctctgctcaaacctcttctactaacaatttc 237  Q
    |||  ||||  | |||||||||||| ||||||||||||    
T  29637923 ttaggttcttggttcaaacctcttccactaacaatttc 29637886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 1624138 - 1624243
Alignment:
Q  60 tttgcttctcctcttccatcattaactggtttatcatctttcaacatttcaagaacatcagttacaaaaa-atacatcaatatcaaattcaccaaagttg 158  Q
    |||||||| |||||| |||| ||||||| |   || ||||| ||||||||||||||| |||||||| ||  |||||||||||| ||||| ||||||||||    
T  1624138 tttgcttcgcctcttgcatccttaactgatacttcttcttttaacatttcaagaacaccagttacagaattatacatcaatattaaattaaccaaagttg 1624237  T
Q  159 taaagt 164  Q
     |||||    
T  1624238 caaagt 1624243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 676435 - 676672
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatcttt 100  Q
    |||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||   |||||||| ||||||||||| |||| || |  ||||||| |    
T  676435 ttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagaccttttgcttcacctcttccatctttaattgatacatcatctct 676534  T
Q  101 caacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgata 199  Q
    ||||||||||||||||||||||| | ||  ||||||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||| || ||||||| |||    
T  676535 caacatttcaagaacatcagttatagaactatacatcaatatcaagttcaccaaagttgcaaagtgagaactccaacgagtatcagcagaacgcttcata 676634  T
Q  200 ttaatttctctgctcaaacctcttctactaacaatttc 237  Q
    |||  ||||  | |||||||||||| ||||||||||||    
T  676635 ttaggttcttggttcaaacctcttccactaacaatttc 676672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 41500848 - 41501002
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcattagaattaaaagattgtttgcttctcctcttccatcattaactggtttatcatcttt 100  Q
    ||||||| |||||||||||| |||| ||||||||| ||||||| ||||||||||||   |||||||| ||||||||||| |||| || |  ||||||| |    
T  41500848 ttttcattaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagaccttttgcttcacctcttccatctttaattgatacatcatctct 41500947  T
Q  101 caacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaa 154  Q
    ||||||||||||||||||||||| | ||  ||||||||||||||| |||||||||    
T  41500948 caacatttcaagaacatcagttatagaactatacatcaatatcaagttcaccaaa 41501002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 251128 - 251170
Alignment:
Q  1 ttttcatcaaatgcaatgtgggtgcgaaatcaaaattattcat 43  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  251128 ttttcatcaaatgcaatgtgagtgcaaaatcaaaattattcat 251170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 19238419 - 19238332
Alignment:
Q  97 ctttcaacatttcaagaacatcagttaca-aaaaatacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatca 184  Q
    ||||||| ||||||||||||||| ||||| ||  |||||||||||||||||| | |||||| | ||| | ||||||| |||||||||||    
T  19238419 ctttcaaaatttcaagaacatcaattacataatgatacatcaatatcaaattaatcaaagtag-aaaatgagaactccaacgaatatca 19238332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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