View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7186_high_6 (Length: 360)
Name: NF7186_high_6
Description: NF7186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7186_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 42210454 - 42210796
Alignment:
| Q |
1 |
ataactgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagctgaaaaattgttcgtagcaagcctaatatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42210454 |
ataactgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagctgaaaaattgttcgtagcaagcctaatatca |
42210553 |
T |
|
| Q |
101 |
ccataggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgtttcttctttaaggacattagcagccaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42210554 |
ccataggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgtttcttctttaaggacattagcagccaaaata |
42210653 |
T |
|
| Q |
201 |
gatagatcattgaagcaaacaaaacagccgcacctataatcgctagtatgataggtagtaaaatgtttctcttgtttttcttacctgcaacacacaaagt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42210654 |
gatagatcattgaagcaaacaaaacagccgcacctataatcgctagtatgataggtagtaaaatgtttctcttgtttttcttacctgcaacacacaaagt |
42210753 |
T |
|
| Q |
301 |
gactcctaacttgtgcataacttgattgttaaggccacatagt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42210754 |
gactcctaacttgtgcataacttgattgttaaggccacatagt |
42210796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 42197877 - 42198220
Alignment:
| Q |
1 |
ataactgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagctgaaaaattgttcgtagcaagcctaatatca |
100 |
Q |
| |
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|||| |||||||||| | |||||||||||||||||| ||||| |||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| |
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| T |
42197877 |
ataagtgctgatgttaagcacacccttgtaaacagagccaaaccctccttttccaaccaagtttgcatctgagaaattgtttgtagcaagcctaatatca |
42197976 |
T |
|
| Q |
101 |
ccataggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgtttc-ttctttaaggacattagcagccaaaat |
199 |
Q |
| |
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| || |||| ||||||| |||||| |||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | | |
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| T |
42197977 |
ctgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttgttttctccaccttgtgtttctttctttaaggacatttgcagccacagt |
42198076 |
T |
|
| Q |
200 |
agatagatcattgaagcaaacaaaacagccgcacctataatcgctagtatgataggtagtaaaatgtttctcttgtttttcttacctgcaacacacaaag |
299 |
Q |
| |
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||||||| ||||| | |||||||||| | |||| |||| | |||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| |
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| T |
42198077 |
agatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatgatagggagtaaaatgtttctcttgtgttttttacctgcaacatacaaag |
42198176 |
T |
|
| Q |
300 |
tgactcctaacttgtgcataacttgattgttaaggccacatagt |
343 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
42198177 |
ttactcccaacttgtgcataacttgattgttaaggccgcatagt |
42198220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 139 - 343
Target Start/End: Complemental strand, 33701289 - 33701085
Alignment:
| Q |
139 |
tgatgacaaacttgttttctctgccttgtgtttcttctttaaggacattagcagccaaaatagatagatcattgaagcaaacaaaacagccgcacctata |
238 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
33701289 |
tgatgacaaacttgttttctccgccttgtgtttcttctttaaggacattagcagccaaaatagatagatcattgaagcgaacaaaacagcagcacctata |
33701190 |
T |
|
| Q |
239 |
atcgctagtatgataggtagtaaaatgtttctcttgtttttcttacctgcaacacacaaagtgactcctaacttgtgcataacttgattgttaaggccac |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
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| T |
33701189 |
atcgctagtatgataggtagtaaaatgtttgttttgtttttcttagatgcaacacacaaagtgactcctaacttgtgggtaacttcattgttaacgccac |
33701090 |
T |
|
| Q |
339 |
atagt |
343 |
Q |
| |
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||||| |
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|
| T |
33701089 |
atagt |
33701085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 42222684 - 42223012
Alignment:
| Q |
6 |
tgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagctgaaaaattgttcgtagcaagcctaatatcaccata |
105 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||| ||||||||| ||||||||||||| |
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| T |
42222684 |
tgcttatgttgaacacacctttgtaaacagatccaaaccctccttttccaaccaagtttgtagctgaaaagttgtttgtagcaagcttaatatcaccata |
42222783 |
T |
|
| Q |
106 |
ggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgtttcttctttaaggacattagcagccaaaatagatag |
205 |
Q |
| |
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||||||||||||| |||||| || ||| |||||||||||| |||||||||| ||||| | |||||||| || |||| || ||||| | |||||| |
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| T |
42222784 |
ggatatattttgagtcaaccccaatagagtggttgatgacaaaattgttttctcctccttgcgcttcttcttggagaacataagtagccacagcagatag |
42222883 |
T |
|
| Q |
206 |
atcattgaagcaaacaaaacagccgcacctataatcgctagtatgataggtagtaaaatgtttctcttgtttttcttacctgcaacacacaaagtgactc |
305 |
Q |
| |
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| |||||| | || ||||||| | ||| |||| |||||||||| ||| | |||| |||||||||||||||| | |||| | ||||||| |
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| T |
42222884 |
agcattgacgtgaataaaacagtaccgcctgtaattgctagtatgacagggactaaa---------ttgtttttcttacctgtgagacacgatgtgactc |
42222974 |
T |
|
| Q |
306 |
ctaacttgtgcataacttgattgttaaggccacatagt |
343 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||| |
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| T |
42222975 |
ctaacgtgtgcataacttcattgttaaggccacatagt |
42223012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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