View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7186_low_1 (Length: 741)
Name: NF7186_low_1
Description: NF7186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7186_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 225 - 725
Target Start/End: Original strand, 47700010 - 47700516
Alignment:
| Q |
225 |
gtttattttgacctcactcatagttaaggagggtttctcttgatataactttagtcttttatgtaatttctcaacaaggtgcaattttgtagaaatattt |
324 |
Q |
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| T |
47700010 |
gtttattttgacctcactcatagttaaggagggtttctcttgatataactttactcttctatgtaatttctcaacaaggtgcaattttgtagaaatattt |
47700109 |
T |
|
| Q |
325 |
cttggtgagtgttcagccctctaagactagtagaccaatcatttgttacatgtcaataccata--agaatttatgtgatgtgtatcctatttctgtaaca |
422 |
Q |
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| T |
47700110 |
cttggcgagtgttcagccctttaagactggtagacaaatcatttgttgcaagtcaataccatataagaatttatgtgatgtgtatcctaattctgtaaca |
47700209 |
T |
|
| Q |
423 |
catttgctcgcttcaattgagtatatctcatat----atgtcccaattgacttacacaaagtgaaatggagtcacaaaaatacaattagggacttaatat |
518 |
Q |
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| T |
47700210 |
catttgctcgcttcaattgagtatatctcatatatatatgtcccagttgacttacacaaaatgaagtggagtcacaaaaatacaattagggatttaatat |
47700309 |
T |
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| Q |
519 |
tgagaccaaaattgctcgtgtaaaaagtgggggaccaaagttgctaaatcacaatacttcagcaatcaaattcttgtttacagattgtattgttgattta |
618 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
47700310 |
ggggaccaaaattgcgcgtgtaaaaagtgggggaccaaagttgctaaatcacaatacttcagcaatcgaattcttgttcagagattgtattgttgattta |
47700409 |
T |
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| Q |
619 |
ctcttgtctcttggactcatttgaacctattgcctctgaattttcttctccaaattgcatatctggaactgaaaggcttctagttttagttctgcctccc |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47700410 |
ctcttgtctcttggactcatttgaacctattgcctctgaattttcttctccaaattgcatatctggaactgaaaggcttctagttttagttctgcctccc |
47700509 |
T |
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| Q |
719 |
ataaaag |
725 |
Q |
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| T |
47700510 |
ataaaag |
47700516 |
T |
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