View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7186_low_10 (Length: 264)
Name: NF7186_low_10
Description: NF7186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7186_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 37743662 - 37743910
Alignment:
| Q |
2 |
agagagttattggtttattgcagttgaattatatacttccaaatagaattatagccaaatgattgaacatcatcaaatttaatgaaatcacatgctagca |
101 |
Q |
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| T |
37743662 |
agagagttattggtttattgcagttgaattatatacttccaaatagaattataaccaaatgattgaacatcatcaaatttaatgaaatcacatgctagca |
37743761 |
T |
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| Q |
102 |
tatactatatggaactgtgactctgaatgaaaataaaaagggaaaacaaactcataaatatggaccgcgtaaataatcttaaaatgacaagaaaaaggaa |
201 |
Q |
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| T |
37743762 |
tatactatatggaactgtgactctgaatgaaaataaaaagggaaagcaaactcataaatatggaccgcgtaaataatcttaaaatgacaagaaaaaggaa |
37743861 |
T |
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| Q |
202 |
tggacgaagtatttttaatttaactgttgaccatgatgaccttcatatt |
250 |
Q |
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| T |
37743862 |
tggacgaagtatttttaatttaactgttgaccatgatgaccttcatatt |
37743910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 34694740 - 34694494
Alignment:
| Q |
8 |
ttattggtttattgcagttgaattatatacttccaaatagaattatagccaaatgattgaacatcatcaaatttaatgaaatcacatgctagcatatact |
107 |
Q |
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| T |
34694740 |
ttattggtttattgcagttgaattatatacttccaaatagaattataaccaaatgattgaacatcatcaaatttaatgaaatcaaatgctagcatatact |
34694641 |
T |
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| Q |
108 |
atatggaactgtgactctgaatgaaaataaaaagggaaaacaaactcataaatatggaccgcgtaaataatcttaaaatgacaagaaaaaggaatggacg |
207 |
Q |
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| T |
34694640 |
atatggaactgcgactctgaatgaaaataaaaagggaaagcaaactcataaatatggactgcgtaaataatcttaaaatgacaagaaaaaggaatggacg |
34694541 |
T |
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| Q |
208 |
aag----tatttttaatttaactgttgaccatgatgaccttcatatt |
250 |
Q |
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| T |
34694540 |
aagtatatatttttaatttaactgttgaccatgatgaccttcatatt |
34694494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 34717152 - 34716906
Alignment:
| Q |
8 |
ttattggtttattgcagttgaattatatacttccaaatagaattatagccaaatgattgaacatcatcaaatttaatgaaatcacatgctagcatatact |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34717152 |
ttattggtttattgcagttgaattatatacttccaaatagaattataaccaaatgattgaacatcatcaaatttaatgaaatcaaatgctagcatatact |
34717053 |
T |
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| Q |
108 |
atatggaactgtgactctgaatgaaaataaaaagggaaaacaaactcataaatatggaccgcgtaaataatcttaaaatgacaagaaaaaggaatggacg |
207 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34717052 |
atatggaactgcgactctgaatgaaaataaaaagggaaagcaaactcataaatatggactgcgtaaataatcttaaaatgacaagaaaaaggaatggacg |
34716953 |
T |
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| Q |
208 |
aag----tatttttaatttaactgttgaccatgatgaccttcatatt |
250 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34716952 |
aagtatatatttttaatttaactgttgaccatgatgaccttcatatt |
34716906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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