View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7186_low_2 (Length: 560)
Name: NF7186_low_2
Description: NF7186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7186_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 29733860 - 29734397
Alignment:
| Q |
18 |
gtttcctccagtctacggtggcaggaatatcagtgacattttcatacttaaatgttgtt---------gttgtagtagtcctttcgaacccgtcatcgga |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29733860 |
gtttcctccagtctacggtggcaggaatatcagtgacattttcatacttaaatgttgttgttggtgttgttgtagtagtcctttcgaacccgtcatcgga |
29733959 |
T |
|
| Q |
109 |
atcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttgaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29733960 |
atcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaagtaatcaatgtaggccacattgtgtttgaat |
29734059 |
T |
|
| Q |
209 |
atttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgataatgatggatcat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29734060 |
atttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgataacgatggatcat |
29734159 |
T |
|
| Q |
309 |
tctcttggttttggatgccttgttgggacaatattccaagtcctattattattagtattttgattagagcacgacgatacttggttttgtccatcaaaac |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29734160 |
tctcttggttttggatgccttgttgggacaatattccaattccaattattattagtattttgattagagcacgacgatacttggttttgtccatcaaaac |
29734259 |
T |
|
| Q |
409 |
cctgttgtgtactataaccaccaactaaagctagttataaagaccaattgtttgtttcctttttccnnnnnnngtgcttatttagatacgtgataaacgt |
508 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29734260 |
cctgctgtgtactataaccaccaactaaagctagttataaagaccaattgtttgtttcctttttccaaaaaaagtgcttatttagatacgtgataaacgt |
29734359 |
T |
|
| Q |
509 |
tgtatttgttacatattttaagaataaatcgttccaca |
546 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
29734360 |
tgtatttgttacatattttcagaataaatcgttccaca |
29734397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 106 - 290
Target Start/End: Complemental strand, 29746263 - 29746080
Alignment:
| Q |
106 |
ggaatcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttg |
205 |
Q |
| |
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||||||||| ||||||| ||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
29746263 |
ggaatcctcaatgggttggtccgcaaatccattaatggcaagtttat-gggtttgttccctgcagcattgaaggattcaatgtagatcacattgtgtttg |
29746165 |
T |
|
| Q |
206 |
aatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggata |
290 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
29746164 |
aatatttcgaagtgttttttcttttctgcaacatccttgtagacaactccatattttgtcttccagtgttcgaatctttcagata |
29746080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 106 - 290
Target Start/End: Original strand, 29606905 - 29607087
Alignment:
| Q |
106 |
ggaatcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttg |
205 |
Q |
| |
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|||||||| ||||||| ||| |||||| ||||||||||||||| | ||||||||| ||||||||||| | ||| ||||||||| ||||||||||||| |
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| T |
29606905 |
ggaatccttaatgggttggtccgcaaatccattaatggcaagtttat-gggtttgttgcctgcagcatttagggattcaatgtagatcacattgtgtttg |
29607003 |
T |
|
| Q |
206 |
aatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggata |
290 |
Q |
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|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29607004 |
aatatttggaagtgtttttttt-ttctgcaacatccttgtagacaactccatattttgtcttccagtgttcgaatctttcggata |
29607087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 94 - 321
Target Start/End: Original strand, 30057025 - 30057252
Alignment:
| Q |
94 |
gaacccgtcatcggaatcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggcc |
193 |
Q |
| |
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|||||| ||||||||| |||| ||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
30057025 |
gaacccatcatcggaaggctcggtgggtagatccgcaaatctattaatggtaagtttgtaggatttgttccctgcagcattaaaggaatcaatgtaggca |
30057124 |
T |
|
| Q |
194 |
acattgtgtttgaatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatg |
293 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| || |||||| |||||||||||| |||| ||| ||| ||||||||| || | ||| ||| |||| || |
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| T |
30057125 |
acattgtgtttgaatatttggatgtgcttttcctcctctgcatcatccttgtagatcactctatactttatcttccagtgcttgtatcgttctgatagtg |
30057224 |
T |
|
| Q |
294 |
ataatgatggatcattctcttggttttg |
321 |
Q |
| |
|
||| ||| ||||||||||||||||||| |
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| T |
30057225 |
ttaaagattgatcattctcttggttttg |
30057252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 138 - 271
Target Start/End: Original strand, 34759144 - 34759276
Alignment:
| Q |
138 |
taatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaac |
237 |
Q |
| |
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||||| |||||||||| |||| ||||||||| ||||| ||| |||||| ||||||||||||||||||||||||| |||||||||| || ||| || | |
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| T |
34759144 |
taatgccaagtttgtatagttttttccctgcaatattga-ggattcaatggaggccacattgtgtttgaatatttggaagtgtttttcgtgctctacatc |
34759242 |
T |
|
| Q |
238 |
atccttgtagacaactccatattttgtcttccag |
271 |
Q |
| |
|
||||||| |||| |||||||| |||| ||||| |
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| T |
34759243 |
atccttgcagacctttccatattatgtcatccag |
34759276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 30056937 - 30056989
Alignment:
| Q |
18 |
gtttcctccagtctacggtggcaggaatatcagtgacattttcatacttaaat |
70 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
30056937 |
gtttcctccagtctacggcagcaggaatatcagtgatatttttatacttaaat |
30056989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 29606814 - 29606855
Alignment:
| Q |
18 |
gtttcctccagtctacggtggcaggaatatcagtgacatttt |
59 |
Q |
| |
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|||||||||||||||||| || |||||||||||||| ||||| |
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| T |
29606814 |
gtttcctccagtctacggcggtaggaatatcagtgatatttt |
29606855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 31194903 - 31194940
Alignment:
| Q |
41 |
ggaatatcagtgacattttcatacttaaatgttgttgt |
78 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||| |
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| T |
31194903 |
ggaatagcagtgacattttcatacttaaatgatgttgt |
31194940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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