View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7186_low_8 (Length: 294)
Name: NF7186_low_8
Description: NF7186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7186_low_8 |
 | |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 12158849 - 12158575
Alignment:
| Q |
14 |
aatattaaataattcaacgtggtaatgatttcctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgttt |
113 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||| |||||| |
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| T |
12158849 |
aatataaaataattcaacgtggtaatgatttcctattgtgaaagattcaatattacctccccattttgattttacgcaaaagaatatatcatatatgttt |
12158750 |
T |
|
| Q |
114 |
ggaatgttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgt |
213 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
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|
| T |
12158749 |
g------taatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttgtaattgctcatttgtgatgt |
12158656 |
T |
|
| Q |
214 |
taatcaagttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagacct |
294 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12158655 |
taatcaagttcatagcattgacgatgtcttgatcttttctttgcaaagcttgtgacaattcatttaacatacctaagacct |
12158575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 292
Target Start/End: Original strand, 30866614 - 30866853
Alignment:
| Q |
46 |
ctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgtttggaatgttaatgtcatgcttattgcaaaataa |
145 |
Q |
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||||||||| |||||||| |||||||||||||||||||| | | ||| || ||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
30866614 |
ctattgtgatagattcaacattacctccacgttttgattgtccacggaagtatatatcatccatgcttggaatgctaatgtcatgcttattgcaaaataa |
30866713 |
T |
|
| Q |
146 |
aattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatgtcttga |
245 |
Q |
| |
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| ||| ||||||||||||| |||| ||||| | ||||||| ||| | ||||| ||||||| ||||||||||| |||||| ||||||||| |
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| T |
30866714 |
agttacctcctccaataaatgttc-------ccatctatcagagtttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttga |
30866806 |
T |
|
| Q |
246 |
tctttcctttgcaaagcttgtgacaattcatttgacatacctaagac |
292 |
Q |
| |
|
||||| || | ||| | |||| |||| | |||||| ||||| ||||| |
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|
| T |
30866807 |
tcttttctctacaatgattgtcacaaataatttgaaatacccaagac |
30866853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 41500573 - 41500847
Alignment:
| Q |
20 |
aaataattcaacgtggtaatgatttcctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgtttggaatg |
119 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||| ||||||| |||||||||||| |||| ||| | |||||| ||||||||||| |||||||| |
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|
| T |
41500573 |
aaataattcaatgcggtaatgattccctattgtgatagattcagcgttacctccacgtattgactttccacggaagaatatatcatccatgcttggaatg |
41500672 |
T |
|
| Q |
120 |
ttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatca |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||| || |||||| | ||||||||| |||| | |
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|
| T |
41500673 |
ttaatgtcatgcttattgccaaataaaattacctcctccaataaaggttcccatccatcatctcttagagcttgtaatcgctcctttgtgatgctaatta |
41500772 |
T |
|
| Q |
220 |
agttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagacct |
294 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |
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|
| T |
41500773 |
ggttcatagcattgacgatgtcttgatctttcctttgcaatgcttgtgacaattcatttgaaaaacctaagacct |
41500847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 4815783 - 4815511
Alignment:
| Q |
20 |
aaataattcaacgtggtaa-tgatttcctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgtttggaat |
118 |
Q |
| |
|
||||||||||| | ||||| ||||| |||||||||| ||||||| |||||||||||||||||| ||| | |||||| ||||||||||| ||||||| |
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|
| T |
4815783 |
aaataattcaatgcggtaaatgattccctattgtgatagattcagcattacctccacgttttgactttccacggaagaatatatcatccatgcttggaat |
4815684 |
T |
|
| Q |
119 |
gttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| || |||||| | ||| ||||| |||| |
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| T |
4815683 |
gttaatgtcatgcttattgcaaaataaaattacctcctccaataaaggttcccatccatcatctcttagagcttgtaatcgctcctttttgatgctaatt |
4815584 |
T |
|
| Q |
219 |
aagttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaaga |
291 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
4815583 |
aggttcatagcattgacgatgtcttgatctttcctttgcaatgcttgtgacaattcatttgaaaaacctaaga |
4815511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 23600024 - 23599746
Alignment:
| Q |
14 |
aatattaaataattcaacgtggtaatgatttcctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgttt |
113 |
Q |
| |
|
||||| ||||||||||| | ||||||||| ||||||||| |||||||| |||||||||| ||||||||| | | |||| || ||||| |||||||| |
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| T |
23600024 |
aatataaaataattcaatgccgtaatgattctctattgtgatagattcaacattacctccatgttttgattgtccacgaaagtatatatcacccatgttt |
23599925 |
T |
|
| Q |
114 |
ggaatgttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgt |
213 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||| | ||||| |||| |
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|
| T |
23599924 |
ggaatgccaatgccatgcttattgcaaaataaatttacctcatccaataaaggttctcattcatcatctcttagagtttgtaacaactcttttgtaatgt |
23599825 |
T |
|
| Q |
214 |
taatcaagttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagac |
292 |
Q |
| |
|
||| ||| ||||||| ||||||||||||||||| ||| | ||||| | ||||||||| | |||||| ||||| ||||| |
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|
| T |
23599824 |
taaccaaattcatagcattgacgatgtcttgattttttatctgcaatgtttgtgacaaattatttgaaatacccaagac |
23599746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 292
Target Start/End: Complemental strand, 13392804 - 13392652
Alignment:
| Q |
140 |
aaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatcaagttcataggattgacgatg |
239 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||| ||||||||||| |||||| |||| | ||||||||||||| |||||||||| |||||||||| |
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|
| T |
13392804 |
aaataaaattacctcttccaataaacattctcatccatcatctctttgagtttgtaattgcttctttgtgatgttaaccaagttcataacattgacgatg |
13392705 |
T |
|
| Q |
240 |
tcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagac |
292 |
Q |
| |
|
|||| ||||||||||| ||| | ||||||||||| |||||| ||||| ||||| |
|
|
| T |
13392704 |
tcttaatctttccttttcaatgattgtgacaatttatttgaaataccaaagac |
13392652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 10068833 - 10068562
Alignment:
| Q |
20 |
aaataattcaacgtggtaatgatttcctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgtttggaatg |
119 |
Q |
| |
|
||||||||||| ||| ||||| || ||||||||||||||||| | ||| | |||| ||||||||| |||| || | ||| ||||||||||||| |
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|
| T |
10068833 |
aaataattcaatgtgataatggttctatattgtgaaagattcaacactactttcacgctttgattttccatgaaagtatatgtcactcatgtttggaatg |
10068734 |
T |
|
| Q |
120 |
ttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatca |
219 |
Q |
| |
|
| | |||||||| ||||||||||||| ||| ||| | ||||||| ||||||| |||||||||| ||||||| |||| | ||||||||| ||| || |
|
|
| T |
10068733 |
tga-tgtcatgcatattgcaaaataattttacctcatataataaagattctcatccatcatctctaagagtttgtaattgtttctttgtgatgctaacca |
10068635 |
T |
|
| Q |
220 |
agttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagac |
292 |
Q |
| |
|
| ||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||| || |||||||| |
|
|
| T |
10068634 |
gttgcatagcattgacaatgtcttgatctttcctttgcaatatttgcgacaattcatttgagatgcctaagac |
10068562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 29638398 - 29638124
Alignment:
| Q |
20 |
aaataattcaacgtggtaatgatttcctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgtttggaatg |
119 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||| ||||||| |||||||||||||||||| ||| | |||||| ||||||||||| |||||||| |
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|
| T |
29638398 |
aaataattcaatgcggtaatgattacctattgtgatagattcagcattacctccacgttttgactttccacggaagaatatatcatccatgcttggaatg |
29638299 |
T |
|
| Q |
120 |
ttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| || || |||||| | ||||||||| ||| | |
|
|
| T |
29638298 |
ttaatgtcatgcttattgcaaaataaaattacctcctccaataaaggttcccatccatcatctcttaaagcttgtaatcgctcctttgtgatgctaacta |
29638199 |
T |
|
| Q |
220 |
agttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagacct |
294 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||| |
|
|
| T |
29638198 |
ggttcatagcattgacaatgtcttgatctttcctttgcaatgcttgtgacaattcatttgaaaaatctaagacct |
29638124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 1623900 - 1623993
Alignment:
| Q |
105 |
tccatgtttggaatgttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatc |
198 |
Q |
| |
|
||||||||||||||||| ||| | || ||||||||||||| || |||| ||||| ||| |||| |||||||||||||| ||||| ||||| |
|
|
| T |
1623900 |
tccatgtttggaatgttcatgccccgcccattgcaaaataaatctacatccttcaatataggatctcgttcatcatctcttaaagtttgtaatc |
1623993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 676160 - 676434
Alignment:
| Q |
20 |
aaataattcaacgtggtaatgatttcctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgtttggaatg |
119 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||| ||||||| |||||||||||||||||| ||| | |||||| ||||||||||| |||||||| |
|
|
| T |
676160 |
aaataattcaatgcggtaatgattacctattgtgatagattcagcattacctccacgttttgactttccacggaagaatatatcatccatgcttggaatg |
676259 |
T |
|
| Q |
120 |
ttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgttaatca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| || || |||||| | ||||||||| ||| | |
|
|
| T |
676260 |
ttaatgtcatgcttattgcaaaataaaattacctcctccaataaaggttcccatccatcatctcttaaagcttgtaatcgctcctttgtgatgctaacta |
676359 |
T |
|
| Q |
220 |
agttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagacct |
294 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||| |
|
|
| T |
676360 |
ggttcatagcattgacaatgtcttgatctttcctttgcaatgcttgtgacaattcatttgaaaaatctaagacct |
676434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 250847 - 251127
Alignment:
| Q |
14 |
aatattaaataattcaacgtggtaatgatttcctattgtgaaagattcaatattacctccacgttttgattttatgcaaaagaatgtatcatccatgttt |
113 |
Q |
| |
|
||||| ||||||||||| | |||||||||| ||||| ||| |||||||| |||||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
250847 |
aatataaaataattcaatgcggtaatgattctctattatgatagattcaacattacctccacgttttgattttctatggaagaatatatcatccatgttt |
250946 |
T |
|
| Q |
114 |
ggaatgttaatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttataatcggccatttgtgatgt |
213 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||| || |||||| | |||||||||| |
|
|
| T |
250947 |
ggaatgctaatatcatgcttattgcaaaataaaattacctcatccaataaaggttcctatccatcatctcttagagcttgtaatcgctcctttgtgatgt |
251046 |
T |
|
| Q |
214 |
taatcaagttcataggattgacgatgtcttgatctttcctttgcaaagcttgtgacaattcatttgacatacctaagacct |
294 |
Q |
| |
|
||| || ||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| || |||| |||||||| |
|
|
| T |
251047 |
taaccaggttcataacattgatgatatcttgatctttcctttgcaatgcttgtgacaattcattcgaaatacttaagacct |
251127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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