View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7187_low_5 (Length: 237)
Name: NF7187_low_5
Description: NF7187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7187_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14784847 - 14785067
Alignment:
| Q |
1 |
tatgggttaagtatgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaagaatgagggtggcctagacataagagacctcat |
100 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14784847 |
tatgggttaaatatgac-aatctcgcagaccc-gtcttgtggggcaagacatttgttgtcttccaaagaatgagggtggcctagacataagagaactcat |
14784944 |
T |
|
| Q |
101 |
cagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaata |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14784945 |
cagatgaatgatgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaaggttctttatagtaagtgtgggagtaata |
14785044 |
T |
|
| Q |
201 |
aagatcttagagtaaccatagat |
223 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
14785045 |
aagatcttagagaaaccatagat |
14785067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 31116755 - 31116547
Alignment:
| Q |
16 |
accaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaatgacgc |
114 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| ||||| |||| |
|
|
| T |
31116755 |
accaatcttgcagaccccatcttgtgggatgggacatttgttgtcttcctaaaaatgagggtggcctaggcattaagagacctcatcatatgaaagacgt |
31116656 |
T |
|
| Q |
115 |
ttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaataaagatcttagagta |
214 |
Q |
| |
|
|||||||| ||||||||||| |||| | || ||||| ||||||||||| ||||| ||| ||||||||||||||| |||||| |||||||||||||| ||| |
|
|
| T |
31116655 |
ttttcttatgaagatgcttttgaatctgatcaccaagcttgatgacctatggtgtaagcttctttatagtaagtatgggaggaataaagatcttagggta |
31116556 |
T |
|
| Q |
215 |
accatagat |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
31116555 |
accatagat |
31116547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 48899140 - 48898930
Alignment:
| Q |
14 |
tgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaatgac |
112 |
Q |
| |
|
|||||||||||||| | ||| |||||| || ||||||||||||||||| ||||||||||||||||||| ||| || | ||||||| | ||||||||| |
|
|
| T |
48899140 |
tgaccaatctcgcaaaacccatcttgttggatgggacatttgttgtcttcctaagaatgagggtggcctaggcattaaaaaacctcataatatgaatgac |
48899041 |
T |
|
| Q |
113 |
gcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaataaagatcttagag |
212 |
Q |
| |
|
|||||||||| ||||||| |||||||| | || ||||| | | ||||||| ||||| ||| |||| |||||||||| |||||| |||||||||||||| | |
|
|
| T |
48899040 |
gcttttcttatgaagatgttttggaatctaatcaccaagcctaatgacctatggtgtaaggttctctatagtaagtatgggaggaataaagatcttaggg |
48898941 |
T |
|
| Q |
213 |
taaccatagat |
223 |
Q |
| |
|
|| |||||||| |
|
|
| T |
48898940 |
tagccatagat |
48898930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 26084777 - 26084893
Alignment:
| Q |
51 |
atttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataacca |
149 |
Q |
| |
|
|||||||||||||| || | | |||||||| ||| ||| ||||||||||| || ||||||||||||||||| | ||||||| |||||||| | || || | |
|
|
| T |
26084777 |
atttgttgtcttcccaaaattaagggtggcttaggcattaagagacctcaccatatgaatgacgcttttctaatgaagatgttttggaatttgatcacaa |
26084876 |
T |
|
| Q |
150 |
aacttgatgacctttgg |
166 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
26084877 |
aaccagatgacctttgg |
26084893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University