View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7188_high_1 (Length: 421)
Name: NF7188_high_1
Description: NF7188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7188_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 44858674 - 44858930
Alignment:
| Q |
16 |
caatattgacagtgagcattggaaaaataaaagacacaaagtaccaactattttaaaagtcatgcattnnnnnnnnnnn----gtatacaagatcctttg |
111 |
Q |
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| T |
44858674 |
caatattgacagtgagcattggaaaaataaaagacacaaagtaccaactattttaaaagtcatgcattaaaaaaaaaaaaaaagtatacaagatcctttg |
44858773 |
T |
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| Q |
112 |
actgttcatactgcaagctattgccaaaatgacttctatccggtaacagcattgctaatnnnnnnngccggtaagaaacgaaacaagacaggcctgtgca |
211 |
Q |
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| T |
44858774 |
actgttcatactgcaagctattgccaaaatgacttctatccagtaacagcattgctaataaaaaaagccgataagaaacgaaacaagacaggcctgtgca |
44858873 |
T |
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| Q |
212 |
agctgtatctgtttcctcttgactggatactattatcacaacatctcttataccaac |
268 |
Q |
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| T |
44858874 |
agctgtatctgtttcctcttgactggatactattatcacaacatctcttataccaac |
44858930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 44858955 - 44859051
Alignment:
| Q |
311 |
cagagcaatgaataatccgcagtatgacctctctaccaaacgctcaacgcgtaattgctctagcctaaagcttgtatcatagataaacatattgatg |
407 |
Q |
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| T |
44858955 |
cagagcaatgaataatccgcaatatgacctctctaccaaacgctcaacgcgtaattgctctagcctaaagcttgtatcatagataaacatattgatg |
44859051 |
T |
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