View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7188_low_1 (Length: 293)
Name: NF7188_low_1
Description: NF7188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7188_low_1 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 283
Target Start/End: Complemental strand, 40102652 - 40102375
Alignment:
| Q |
6 |
gtgagaagaagagtaatgattataattataaatacactttttctgttgaaatttgtcctgtttgtcgtgaggatttgatttttctgcctcctaaagttgc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40102652 |
gtgataagaagagtaatgattataattataaatacactttttctgttgaaatttgtcctgtttgtcgtgaggatttgatttttctgcctcctaaagttgc |
40102553 |
T |
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| Q |
106 |
ttcgagtttgggaaatatcggtcctattgtgatttgcactagggttaccaacacgattgccttgtttgatccgattacctcgggacgctgtttcttagtt |
205 |
Q |
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| T |
40102552 |
ttcgagtttgggaaatatcggtcctattgtggtttgcactagggttaccaacacaattgctttgtttgatccgattacctcgggacgctgtttcttagtt |
40102453 |
T |
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| Q |
206 |
ggtgatgtgtattggagggcaccctttaagtctttactcactagcaaagagttagtggaatatgttgtgcttgatgtc |
283 |
Q |
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| T |
40102452 |
ggtgatgtgtattggagggcaccctttaagtctttactcactagcaaagagttagtggaatatgttgtgcttgatgtc |
40102375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 40596284 - 40596340
Alignment:
| Q |
76 |
ggatttgatttttctgcctcctaaagttgcttcgagtttgggaaatatcggtcctatt |
133 |
Q |
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| T |
40596284 |
ggatttgatttttctgcctcctaaggttgcatccag-ttgggaaatattagtcctatt |
40596340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 29271500 - 29271648
Alignment:
| Q |
29 |
aattataaatacactttttctgttgaaatttgtcctgtttgtcgtgaggatttgatttttctgcctcctaaagttgcttcgagtttgggaaatatcggtc |
128 |
Q |
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| T |
29271500 |
aattataagtacacattttctgtggaaatcagccccatttgtcgtgaggatttaatttgtttgcctcctaaagctgctgcaattttgggaaatattggtc |
29271599 |
T |
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| Q |
129 |
ctattgtgatttgcactagggttaccaacacgattgccttgtttgatcc |
177 |
Q |
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| T |
29271600 |
ctattgtgatttgcacgaaggttactaacagcattgctttgcttgatcc |
29271648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 43996086 - 43996340
Alignment:
| Q |
14 |
aagagtaatgattataattataaatacactttttctgttgaaatttgtcctgtttgtcgtgaggatttgatttttctgcctcctaaag-ttgcttcgagt |
112 |
Q |
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| T |
43996086 |
aagagtaatgactacaactataaatacacgttttcagttgaaatcagccccatttgtcgcgaggatttaatttgcttgcctcctaaagcttacatagc-t |
43996184 |
T |
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| Q |
113 |
ttgggaaatatcggtcctattgtgatttgcactagggttaccaacacgattgccttgtttgatccgattacctcgggacgctgtttcttagttggtgatg |
212 |
Q |
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| T |
43996185 |
ttgggcaatattggtcctattgtgatttgcaccaaggttactaacagcattgctttgcttgatccacttaccttgaagtacagtttcttagatgctgatc |
43996284 |
T |
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| Q |
213 |
tgtattggagggcaccctttaagtctttactcactagcaaagagttagtggaatat |
268 |
Q |
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| T |
43996285 |
agtattggagggcatccttcaaatccttacttactagcaaagagttggtggaatat |
43996340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 56224 - 56300
Alignment:
| Q |
66 |
tttgtcgtgaggatttgatttttctgcctcctaaagttgcttcgagtttgggaaatatcggtcctattgtgatttgc |
142 |
Q |
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| T |
56224 |
tttgtcttgaggatttaatttgtttgcctcctaatgctgctgcaattttgggaaatattggtcctattgtgttttgc |
56300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 16044198 - 16044129
Alignment:
| Q |
73 |
tgaggatttgatttttctgcctcctaaagttgcttcgagtttgggaaatatcggtcctattgtgatttgc |
142 |
Q |
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| T |
16044198 |
tgaggatttaatttgtttgcctcctaatgctgctgcaattttgggaaatattggtcctattgtgttttgc |
16044129 |
T |
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