View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7189_low_3 (Length: 204)
Name: NF7189_low_3
Description: NF7189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7189_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 33030596 - 33030796
Alignment:
| Q |
1 |
tgtttccaaactccgtagcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgattgtaacaaaaatacatagaaaaagacttttgataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33030596 |
tgtttccaaactccgtagcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgattgtaactaaaatacatagaaaaagacttttgataa |
33030695 |
T |
|
| Q |
101 |
ctaaacaaatataaacatttagttcctcataacagatgcatttcacacagaaatttgtctagactgacagcattgaaaacatcaccaacagaattatcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33030696 |
ctaaacaaatataaacatttagttcctcataacagatgcatttcacacagaaatttgtctagactgacagcattgaaaacatcaccaacaaaattatcta |
33030795 |
T |
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| Q |
201 |
g |
201 |
Q |
| |
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| |
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| T |
33030796 |
g |
33030796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 33026355 - 33026458
Alignment:
| Q |
95 |
tgataactaaacaaatataaacatttagttcctcataacagatgcatttcacacagaaatttgtctagactgacagcattgaaaacatcaccaacagaat |
194 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
33026355 |
tgataactaaacaaatataaccatttagatcctcataacagatgcatttcacacagaaatttgtctagactgacatcattgaaaacatcaccaacaaaat |
33026454 |
T |
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| Q |
195 |
tatc |
198 |
Q |
| |
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|||| |
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| T |
33026455 |
tatc |
33026458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 33015822 - 33015963
Alignment:
| Q |
1 |
tgtttccaaactccgtagcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgattgtaacaaaaatacatagaaaaagacttttgataa |
100 |
Q |
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|
||||||||||||| || |||||||||||||||||||||||||| | |||| |||||| | ||||| ||| ||||||||| || |||||||||||||||| |
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| T |
33015822 |
tgtttccaaactctgtcgcaacacaaaactgcaccaatccaaatgcacaagtctaaaat-ctgatcataataaaaatacaaaggaaaagacttttgataa |
33015920 |
T |
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| Q |
101 |
ctaaacaaatataaacatttagttcctcataacagatgcattt |
143 |
Q |
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| ||||||||| ||| ||||| ||||||||||||||| |||| |
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| T |
33015921 |
ccaaacaaatacaaatatttatgtcctcataacagatgtattt |
33015963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 33041327 - 33041460
Alignment:
| Q |
1 |
tgtttccaaactccgtagcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgattgtaacaaaaatacatagaaaaagacttttgataa |
100 |
Q |
| |
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|||||||| |||| || |||||| ||||||||||||||||| | | | |||||||||||||| ||||||||||||| || ||||||| |||||| |
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| T |
33041327 |
tgtttccacactctgttgcaacataaaactgcaccaatccagatgcaagcttctaaatttctgacattaacaaaaatacaaaggcaaagactcgtgataa |
33041426 |
T |
|
| Q |
101 |
ctaaacaaatataaacatttagttcctcataaca |
134 |
Q |
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| | |||||||||| ||||||||| ||||||||| |
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| T |
33041427 |
ccagacaaatataaccatttagttactcataaca |
33041460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 32828499 - 32828451
Alignment:
| Q |
94 |
ttgataactaaacaaatataaacatttagttcctcataacagatgcatt |
142 |
Q |
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|||||||| |||||||||||| ||||||| |||| |||||| ||||||| |
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| T |
32828499 |
ttgataaccaaacaaatataaccatttagctccttataacaaatgcatt |
32828451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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