View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7191_high_10 (Length: 362)
Name: NF7191_high_10
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7191_high_10 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 25997475 - 25997685
Alignment:
| Q |
21 |
gttccatatgtctttcttgcaatccaagattactttcacaacttcttgattcatctcaaggagacattctgtgacctgtttcagcgattcgaacgaaagg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25997475 |
gttccatatgtctttcttgcaatccaagattactttcacaacttcttgattcatctcaaggagacattctgtgacctgtttcagggattcgaacgaaagg |
25997574 |
T |
|
| Q |
121 |
gctcgaacttcgacgccagaagcaagagtgttgatgacttgatttgttctggtttgaagtgttgaatcaaatgtctgcaaatctgtgtcaattttgcagg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25997575 |
gctcgaacttcgacgccagaagcaagagtgttgatgacttgatttgttctggtttgaagtgttgaatcaaatgtctgcaaatctgtgtcaattttgcagg |
25997674 |
T |
|
| Q |
221 |
ctgcttcatag |
231 |
Q |
| |
|
||||||||||| |
|
|
| T |
25997675 |
ctgcttcatag |
25997685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 75603 - 75545
Alignment:
| Q |
294 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacccaaagtgctcaagcaagt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
75603 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacacaaagtgctcaagcaagt |
75545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 21974578 - 21974520
Alignment:
| Q |
294 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacccaaagtgctcaagcaagt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21974578 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacacaaagtgctcaagcaagt |
21974520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 44479600 - 44479658
Alignment:
| Q |
294 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacccaaagtgctcaagcaagt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44479600 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacacaaagtgctcaagcaagt |
44479658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 12558423 - 12558570
Alignment:
| Q |
22 |
ttccatatgtctttcttgcaatccaagattactttcacaacttcttgattcatctcaaggagacattctgtgacctgtttcagcgattcgaacgaaaggg |
121 |
Q |
| |
|
|||||||| |||||||| || || |||||||| ||||||||||| ||||||||||| || || |||||||| || ||||| || || || |||||||||| |
|
|
| T |
12558423 |
ttccatatatctttcttacagtctaagattaccttcacaacttcctgattcatctcgagaaggcattctgttacttgtttgagggaatcaaacgaaaggg |
12558522 |
T |
|
| Q |
122 |
ctcgaacttcgacgccagaagcaagagtgttgatgacttgatttgttc |
169 |
Q |
| |
|
||||||||| || ||| ||||||| || ||||| |||||||||| |
|
|
| T |
12558523 |
atcgaacttcaactccaactgcaagagaatttatgacctgatttgttc |
12558570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University