View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7191_high_11 (Length: 356)
Name: NF7191_high_11
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7191_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 4822357 - 4822033
Alignment:
| Q |
14 |
gtggagaagaagatagaaaagatcataccatgtccaagatgcaagagtatggaaactaaattttgttatttcaataattacaacgttaatcaaccaagac |
113 |
Q |
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| T |
4822357 |
gtggagaagaagatagaaaagatcataccatgtccaagatgcaagagtatggaaactaaattttgttatttcaataattacaacgttaatcaaccaagac |
4822258 |
T |
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| Q |
114 |
atttttgtaagagttgtcaaaggtactggacggctggtggggccctgcgtaacgttccggttggagctggtcgtcggaaggccaagccacccggtcacga |
213 |
Q |
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| T |
4822257 |
atttttgtaagagttgtcaaaggtactggacggctggtggggccctgcgtaacgttccggttggagctggtcgtcggaaggccaagccacccggtcacga |
4822158 |
T |
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| Q |
214 |
ggatagtggttcaccggaaagttgtctctacgaagctgctagttctgatgatggccataactacttagggttagaacaatttatgcctcctcagagtgat |
313 |
Q |
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| T |
4822157 |
ggatagtggttcaccggaaagttgtctctacgaagctgctagttctgatgatggccataactacttagggttagaacaatttatgcctcctcagagtgat |
4822058 |
T |
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| Q |
314 |
tttcgggaagtattttccggcaaac |
338 |
Q |
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| T |
4822057 |
tttcgggaagtattttccggcaaac |
4822033 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 9431437 - 9431348
Alignment:
| Q |
43 |
atgtccaagatgcaagagtatggaaactaaattttgttatttcaataattacaacgttaatcaaccaagacatttttgtaagagttgtca |
132 |
Q |
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| T |
9431437 |
atgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctcggcatttttgtcggagttgtca |
9431348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 18188137 - 18188194
Alignment:
| Q |
41 |
ccatgtccaagatgcaagagtatggaaactaaattttgttatttcaataattacaacg |
98 |
Q |
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| T |
18188137 |
ccatgtccaagatgcaaaagcatggacacaaaattttgttactacaataattacaacg |
18188194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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