View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7191_high_2 (Length: 679)
Name: NF7191_high_2
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7191_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 18 - 663
Target Start/End: Original strand, 2747276 - 2747937
Alignment:
| Q |
18 |
aatataagttgcacaaagaaaatttggcctacttattatattgcttatgattgatgaagattttgatagttatagaaactttgcatatccacatacctaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747276 |
aatataagttgcacaaagaaaatttggcctacttattat--tgcttatgattgatgaagattttgatagttatagaaactttgcatatccacatacctaa |
2747373 |
T |
|
| Q |
118 |
taccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747374 |
taccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaac |
2747473 |
T |
|
| Q |
218 |
aaaattaataatatggttcaatcatatatataattgcaaatacataacatacaaatcttaccataatgaaaccacgccttaatgtcacataatccaactt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747474 |
aaaattaataatatggttcaatcatatatataattgcaaatacataacatacatatcttaccataatgaaaccacgccttaatgtcacataatccaactt |
2747573 |
T |
|
| Q |
318 |
tgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatatgaaaaattacaaggcataatcaactac------aatagtcaaagacaatat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2747574 |
tgtcactgatccataaaattgcttgaaaaatgatttctgaaatataaatgaaaaattacaaggcataatcaactacaatattaatagtcaaagacaatat |
2747673 |
T |
|
| Q |
412 |
ggtaaaaccagaaaag--------------tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataa |
497 |
Q |
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| T |
2747674 |
ggtaaaaccagaaaagtataatcaactacatataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataa |
2747773 |
T |
|
| Q |
498 |
aagcatgctgatgaacatgagtcaccgtatccttccattcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacagaaaatatca |
597 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2747774 |
aagaatgctgatgaacatgagtcaccgtatccgtccattcgggtgctgcattagaccgg--tatggataatataaagtttaatgaagacagaaaatatca |
2747871 |
T |
|
| Q |
598 |
agatattacaccataaccgatcaaatttgtttaccatgttgtgattcatggttttcatctgcaaca |
663 |
Q |
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| T |
2747872 |
agatattacaccataaccgatcaaatttgtttaccatgttgtgattcatggttttcatctgcaaca |
2747937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 109 - 357
Target Start/End: Original strand, 2755414 - 2755662
Alignment:
| Q |
109 |
catacctaataccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttggatttcccctacaatgagtctaaaa |
208 |
Q |
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||||||||||||| ||||| || | ||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2755414 |
catacctaataccgacaactttcttgaaatcatcttcaagcgcacggttcatgtacttgtgaaaattaaacttcggatttcccctacaatgagtctaaaa |
2755513 |
T |
|
| Q |
209 |
tagaaaaacaaaattaataatatggttcaatcatatat-ataattgcaa-atacataacatacaaatcttaccataatgaaaccacgccttaatgtcaca |
306 |
Q |
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| | ||||| ||||||||||||| ||||||||||||| ||||| |||| ||| ||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
2755514 |
ca-ataaacagaattaataatatgattcaatcatatataataatggcaagata-tgcacactaaaatcttaccttaatgaaaccaagccttaatgtcaca |
2755611 |
T |
|
| Q |
307 |
taatccaactttgtcactgatccataaaattgcttgaaaaatgatttctga |
357 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2755612 |
tagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
2755662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 428 - 628
Target Start/End: Original strand, 2755748 - 2755945
Alignment:
| Q |
428 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
527 |
Q |
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|||||| ||||||||| ||| |||||||| ||| ||| ||||||||||||||||||| ||| ||| |||||||| || |||||||||||||||||||||| |
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| T |
2755748 |
tataattaacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtat |
2755847 |
T |
|
| Q |
528 |
ccttccattcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacag-aaaatatcaagatattacaccataaccgatcaaatttg |
626 |
Q |
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|| ||| |||||| ||||||||||||| | |||| || ||||||||| |||||| |||| ||||||| ||| ||||||||||||| ||||||||||| |
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| T |
2755848 |
ccgtccgttcgggggctgcattagaccag--tatgcatgttataaagttcaatgaaaacagaaaaatattaag--attacaccataactgatcaaatttg |
2755943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 428 - 553
Target Start/End: Original strand, 2372998 - 2373123
Alignment:
| Q |
428 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
527 |
Q |
| |
|
|||||| ||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||| |
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| T |
2372998 |
tataattaacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatgaacatgagtcaccgtat |
2373097 |
T |
|
| Q |
528 |
ccttccattcgggtgctgcattagac |
553 |
Q |
| |
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|| ||| |||||| |||||||||||| |
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| T |
2373098 |
ccatccgttcgggggctgcattagac |
2373123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 168 - 375
Target Start/End: Original strand, 2372741 - 2372946
Alignment:
| Q |
168 |
tgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataatatggttcaatcatatatataattgcaaatacata-aca |
266 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||| ||||| || || |||||||||||| |||||| ||| ||| |||| || | || ||| |
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| T |
2372741 |
tgaaaattaaactttgaat---ccctacaatgagtctaatatagagaatcatcattaataatatgattcaataatagataatattggcaagatatgcaca |
2372837 |
T |
|
| Q |
267 |
tacaaatcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatat |
366 |
Q |
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|||||||||| ||||||||||| ||||||||| || ||| ||||||||||||| |||||||||||||||||||||| | |||||||||||| | || |
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| T |
2372838 |
ctaaaatcttaccttaatgaaaccaagccttaatgccatatagtccaactttgtcatagatccataaaattgcttgaaaatttatttctgaaataaaaat |
2372937 |
T |
|
| Q |
367 |
gaaaaatta |
375 |
Q |
| |
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| ||||||| |
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| T |
2372938 |
gcaaaatta |
2372946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 55322128 - 55322043
Alignment:
| Q |
274 |
cttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaa |
359 |
Q |
| |
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|||||| ||||||||||| | |||||||| |||||||| | |||||||| || |||||||||||||||||||| |||| |||||| |
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| T |
55322128 |
cttaccgtaatgaaaccaagtcttaatgtgacataatctgattttgtcacagagccataaaattgcttgaaaaaggattgctgaaa |
55322043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 55322305 - 55322259
Alignment:
| Q |
138 |
tcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttgg |
184 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
55322305 |
tcatcttcaagggcacgaatcatgtacttgtgaaaattaaactttgg |
55322259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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