View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7191_high_7 (Length: 483)
Name: NF7191_high_7
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7191_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 260 - 478
Target Start/End: Complemental strand, 36890374 - 36890157
Alignment:
| Q |
260 |
aaatataaacggaatagctatgtccaagaggtgtccgttcggtggttcaaatttcatctgagttgtaatttgatcattagtgtcactcttattaatcaaa |
359 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
36890374 |
aaatataaacggaatagccatatccaagaggtgtccgttcggtggttcaaatttcatctgagttgtaatttgattatttgtgtcactcttattaatcaaa |
36890275 |
T |
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| Q |
360 |
tttcccctctccannnnnnnataaaataattattaattactttcacagttatgtatgttcttatttcannnnnnnnnnaatatcactatatatttttgtt |
459 |
Q |
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| T |
36890274 |
tttcccctctccatttttttataaaataattataaattactttcacagttatgtatgttcttatttca-tttttttttaatatcactatatatttttgtt |
36890176 |
T |
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| Q |
460 |
ttggtacattcatctcact |
478 |
Q |
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| T |
36890175 |
ttggtacattcatatcact |
36890157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 36890702 - 36890631
Alignment:
| Q |
123 |
attagtcatagaaaaacatttgttatgtcaatgtttttctcttgatatatgcgtaaaagaacaatatattgc |
194 |
Q |
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| T |
36890702 |
attagtcatagaaaaacatttgttatgtcaatgtttttctcttgatatatgtgtaaaagaacaatatattgc |
36890631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 36890765 - 36890725
Alignment:
| Q |
41 |
aaatatatgtgtcatccaaaaaagctagcagcgcagcttgt |
81 |
Q |
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| T |
36890765 |
aaatatatgtgtcatccgaaaaagctagcggcgcagcttgt |
36890725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 29824582 - 29824627
Alignment:
| Q |
320 |
agttgtaatttgatcattagtgtcactcttattaatcaaatttccc |
365 |
Q |
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|||||||||||| ||||||||| |||| |||||||| ||||||||| |
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| T |
29824582 |
agttgtaatttggtcattagtgccactgttattaataaaatttccc |
29824627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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