View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7191_low_1 (Length: 723)

Name: NF7191_low_1
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7191_low_1
NF7191_low_1
[»] chr2 (1 HSPs)
chr2 (20-706)||(4315509-4316199)


Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 20 - 706
Target Start/End: Complemental strand, 4316199 - 4315509
Alignment:
Q  20 tactgttgatcaatgattttctttttgttaacccttcggttttcaggggaatgaagaggtccaggtaatccggagttcgatcgtgagataaatacgattc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  4316199 tactgttgatcaatgattttctttttgttaacccttcggttttcaggggaatgaagaggtcctggtaatccggagttcgatcgtgaagtaaatacgattc 4316100  T
Q  120 ttatttgatgaagctcattaaccacttgaatttaattgttttctatcgatgaaattttatcttgggcttaagcgttatttttgtatcttataaaacacat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4316099 ttatttgatgaagctcattaaccacttgaatttaattattttttatcaatgaaattttatcttcggcttaagcgttatttttgtatcttataaaacacat 4316000  T
Q  220 taggcattttgaatgttgcagctaactagagatttatactattttaatattggnnnnnnnnnnnnn----gacaagatattttaattggtt----attga 311  Q
    |||||||||||||| ||||||||||||||||||    ||||||||||||||||                 |||||||||||||||||||||    |||||    
T  4315999 taggcattttgaatattgcagctaactagagat----actattttaatattggttttttttttctttttcgacaagatattttaattggttggttattga 4315904  T
Q  312 ctgctattcctattccaacagagttaaaaattagggcttcttcatacggagcagaatatacgtttttgaaacaatcaagatatcaatattcaatgcataa 411  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4315903 ctgctattcctattccaacagagttaaaaattagggcatcttcatactgagcagaatatacgtttttgaaacaatcaagatatcaatattcaatgcataa 4315804  T
Q  412 aatactgctactgcgactgtattcacacgtcccaagatcacacacttttttattctttgattcattcattcattcatgtgaaacttttcggggaatggat 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4315803 aatactgctactgcgactgtattcacacgtcccaagatcacacacttttttattctttgattcattcattcattcatgtgaaacttttcggtgaatggat 4315704  T
Q  512 ccatttcagcatcctatgcctatttccttgtcgttactgagaccatattcacacatgacaacagcaacacacactttcacaaagtaacaactcgacctta 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4315703 ccatttcagcatcctatgcctatttccttgtcgttactgagaccatattcacacatgacaacagcaacacacactttcacaaagtaacaacttgacctta 4315604  T
Q  612 ctgcaccagatacaaataatcaatctctgattttatctctttcggtccaatctccatccatatcatggcggcggcggttgttggtgaagcttttt 706  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4315603 ctgcaccagatacaaataatcaatctctgatttcatctctttcgatccaatctccatccatatcatggcggcggcggttgttggtgaagcttttt 4315509  T

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