View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7191_low_17 (Length: 269)
Name: NF7191_low_17
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7191_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 9384585 - 9384825
Alignment:
| Q |
10 |
gtccaataatataattctaaaacatgaagctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaattttta |
109 |
Q |
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| T |
9384585 |
gtccaataatataattctaaaacatgaagctctcgttcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaattttta |
9384684 |
T |
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| Q |
110 |
ctccacctatgttagcctaatgagctaacatattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatc |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9384685 |
ctccacctatgttagcctaatgagttaacatattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatc |
9384784 |
T |
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| Q |
210 |
aacattaacattcaatgtctctaacaatctcaatgcccttt |
250 |
Q |
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| T |
9384785 |
aacattaacattcaatgtctctaacaatctcaatgcccttt |
9384825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 31947700 - 31947911
Alignment:
| Q |
39 |
ctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaac |
138 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31947700 |
ctctcattcaaacatggattgaattttactacaagatcattctctcatttacaaaaggacattaatttttactctacctatgttagcctaatgagctaac |
31947799 |
T |
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| Q |
139 |
atattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaacaatc |
238 |
Q |
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| T |
31947800 |
atatttaaacacaacactctattttttaccaaacagctaaatatgcaatctaatctaccttctaaactatcaacattaacattcaatgtctctgacaatc |
31947899 |
T |
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| Q |
239 |
tcaatgcccttt |
250 |
Q |
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| T |
31947900 |
ttaatgcccttt |
31947911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 31455655 - 31455574
Alignment:
| Q |
154 |
actctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaaca |
235 |
Q |
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||||||||| ||| ||||||||| | |||||||| ||||||||||| | | | |||||||||||||||||||||||||| |
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| T |
31455655 |
actctatttcgtactaaacatctataaatgcaatccaatccaccttcaagtccacaaacattaacattcaatgtctctaaca |
31455574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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