View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7191_low_4 (Length: 575)
Name: NF7191_low_4
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7191_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 79 - 562
Target Start/End: Original strand, 20474104 - 20474588
Alignment:
| Q |
79 |
aataaaatataaagaaacaatggttgatgcaaacacttgaagaataatatccaataccgtcctaaaccaaagacgagagatggaaaaagaatctcattct |
178 |
Q |
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| T |
20474104 |
aataaaagacaaagaaacaatggttgatgcaaacacttgaagaataatatccaataccgtcctaaaccaaagacgagagatggaaaaagaatctcattct |
20474203 |
T |
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| Q |
179 |
aatgatgaataagaaaggaaaaataaacaagagaattaacatagtttatacgtagacatgattaattgaagagaaataccaagcttataatttttcaaat |
278 |
Q |
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| T |
20474204 |
aatgatgaataagaaaggaaaaataaacaagagaattaacatagtttatacgtagacatgattaattgaagagaaataccaagcttataattttgcaaat |
20474303 |
T |
|
| Q |
279 |
tcaattcatcaatcacttagcaaagctatgtcacattatgtttaaagtagattcatcacttagcagaactgaaccatgtttttcaaacaaaaccaatcat |
378 |
Q |
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| T |
20474304 |
tcaattcatcaatcacttagcaaagttatgtcacattatgtttaaagtagattcatcacttagcagaactgaaccatgtttttcaaacaaaaccaatcat |
20474403 |
T |
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| Q |
379 |
caaatcaaatcacaaaattaataaagttcctttattcaaatcaccaaataagaatcgaaatcccaaaacttatagaacaaaa-tcagaaagagtgcatat |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20474404 |
caaatcaaatcacaaaattaataaagttcctttattcaaatcaccaaataagaatcaaaatcccaaaacttatagaacaaaattcagaaagagtgcatat |
20474503 |
T |
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| Q |
478 |
cttcaatcactaaataaaaatcaaattccacaattaaaagaagacaaaaactgcaggaactatacaagatacattcaattcatat |
562 |
Q |
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| T |
20474504 |
cttcaatcactaaataaaaaacaaattccacaattaaaagaagacaaaaactacaggaactatacaagatacattcaattcatat |
20474588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 15122003 - 15122082
Alignment:
| Q |
17 |
atatggaagcttcaatgttacaacatgaatacttgtatttctgttacaaaggcatacatatgaataaaatataaagaaac |
96 |
Q |
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||||||||| ||| ||||||||||||||| || |||| ||| |||||||||||| ||||| | ||||||||| ||||| |
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| T |
15122003 |
atatggaagtttcgatgttacaacatgaacgctggtatctctattacaaaggcatccatatagagaaaatataaggaaac |
15122082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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