View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7191_low_5 (Length: 559)

Name: NF7191_low_5
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7191_low_5
NF7191_low_5
[»] chr4 (11 HSPs)
chr4 (18-549)||(24153599-24154130)
chr4 (137-399)||(50722947-50723209)
chr4 (155-403)||(4377498-4377758)
chr4 (264-394)||(2158917-2159047)
chr4 (221-403)||(5882718-5882900)
chr4 (234-376)||(33518382-33518523)
chr4 (137-387)||(36248071-36248332)
chr4 (295-403)||(2815920-2816028)
chr4 (137-274)||(2815772-2815920)
chr4 (155-219)||(2158847-2158911)
chr4 (155-232)||(33518292-33518368)
[»] chr3 (13 HSPs)
chr3 (137-403)||(26285462-26285728)
chr3 (157-393)||(23778476-23778721)
chr3 (221-394)||(36477681-36477854)
chr3 (158-386)||(24310096-24310335)
chr3 (221-394)||(7728698-7728871)
chr3 (222-403)||(36475763-36475945)
chr3 (221-394)||(8034882-8035055)
chr3 (155-394)||(26903367-26903617)
chr3 (155-394)||(36617423-36617673)
chr3 (137-394)||(38573175-38573443)
chr3 (155-225)||(25032075-25032145)
chr3 (137-225)||(7856697-7856785)
chr3 (160-220)||(35502350-35502410)
[»] chr1 (12 HSPs)
chr1 (137-379)||(9539278-9539520)
chr1 (137-394)||(6226881-6227149)
chr1 (137-394)||(10780820-10781076)
chr1 (155-394)||(25031162-25031411)
chr1 (137-394)||(34912509-34912778)
chr1 (234-387)||(9477932-9478085)
chr1 (155-394)||(1016651-1016901)
chr1 (270-366)||(42311301-42311397)
chr1 (157-215)||(8065199-8065257)
chr1 (160-220)||(31738109-31738169)
chr1 (155-225)||(27464077-27464147)
chr1 (183-225)||(9477870-9477912)
[»] chr7 (18 HSPs)
chr7 (221-394)||(30074278-30074451)
chr7 (137-378)||(2945049-2945301)
chr7 (146-387)||(33941283-33941535)
chr7 (221-393)||(38293455-38293627)
chr7 (221-392)||(10702848-10703019)
chr7 (234-394)||(24039503-24039663)
chr7 (146-393)||(1691857-1692117)
chr7 (221-394)||(43265580-43265753)
chr7 (221-393)||(32221655-32221826)
chr7 (156-393)||(46089832-46090079)
chr7 (155-225)||(38300194-38300264)
chr7 (318-378)||(3045064-3045124)
chr7 (155-225)||(8256765-8256835)
chr7 (152-225)||(24658636-24658709)
chr7 (165-225)||(1247850-1247910)
chr7 (158-220)||(25233168-25233230)
chr7 (164-226)||(25617885-25617947)
chr7 (155-225)||(43265760-43265830)
[»] chr2 (11 HSPs)
chr2 (221-394)||(18458889-18459062)
chr2 (221-387)||(6141587-6141753)
chr2 (162-385)||(3356741-3356975)
chr2 (155-377)||(32033191-32033422)
chr2 (221-394)||(4075860-4076033)
chr2 (240-385)||(11562318-11562463)
chr2 (251-392)||(18703302-18703443)
chr2 (155-287)||(4075659-4075801)
chr2 (143-220)||(18703482-18703559)
chr2 (155-225)||(11562222-11562292)
chr2 (157-206)||(7700561-7700610)
[»] chr6 (7 HSPs)
chr6 (137-372)||(6689395-6689641)
chr6 (137-394)||(21883456-21883724)
chr6 (137-385)||(2919689-2919948)
chr6 (155-394)||(24901898-24902148)
chr6 (155-394)||(18817129-18817379)
chr6 (224-365)||(19266871-19267012)
chr6 (137-378)||(14607418-14607670)
[»] chr8 (8 HSPs)
chr8 (137-403)||(2148580-2148857)
chr8 (239-393)||(6802400-6802554)
chr8 (146-382)||(24556555-24556802)
chr8 (239-387)||(32161038-32161186)
chr8 (221-403)||(29866459-29866641)
chr8 (155-394)||(45485841-45486091)
chr8 (254-393)||(44873613-44873752)
chr8 (146-224)||(6802580-6802658)
[»] chr5 (8 HSPs)
chr5 (158-394)||(36745159-36745406)
chr5 (137-403)||(43144762-43145039)
chr5 (185-394)||(36633629-36633849)
chr5 (221-392)||(17076261-17076431)
chr5 (221-481)||(25819371-25819636)
chr5 (294-364)||(30077995-30078064)
chr5 (326-387)||(25767341-25767402)
chr5 (158-220)||(5569180-5569242)
[»] scaffold0535 (1 HSPs)
scaffold0535 (159-220)||(9895-9956)


Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Original strand, 24153599 - 24154130
Alignment:
Q  18 aatacatcatctcgtgaagcctacagtgcacttgtaaacacaaattaaaatggaaaacctgtaaacatgagaagttgttatttagagattcaaagtttgg 117  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24153599 aataaatcatctcgtgaagcctacggtgcacttgtaaacacaaattaaaatggaaaaccagtaaacatgagaagttgttatttagagattcaaagtttgg 24153698  T
Q  118 gaagtagaacactaaatgaaacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgt 217  Q
    ||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  24153699 gaaatagaacactaaatgaaacatttgtagttgctaccgccaagagcaaagtcaacttcacatgcttataaactatagtaaatgtgttgcacttatttgt 24153798  T
Q  218 ttccacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctgg 317  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24153799 ttccataaagatttggaagccctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttccgg 24153898  T
Q  318 cacatttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagactcattaaacacattata 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24153899 cacatttataaaattatttggataaaactcaatcatcctcaataatttggtcatatcaaaagctgcaaattactttgagagactcattaaacacattata 24153998  T
Q  418 agagttttagaaggttgttgatttgttcttattttcaacatattgtgctttatttatataaaaagagaaaattagacgtgtagctttagtcacacataac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24153999 agagttttagaaggttgttgatttgttcttattttcaacatattgtgttttatttatataaaaaaagaaaattagacgtgtagctttagtcacacataac 24154098  T
Q  518 cattgaatgagtctgccccggctcacaggttc 549  Q
    ||||||||||||   |||||||||||||||||    
T  24154099 cattgaatgagttcaccccggctcacaggttc 24154130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 137 - 399
Target Start/End: Complemental strand, 50723209 - 50722947
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 236  Q
    |||| ||| |||| ||| ||||||||| ||||||||||||| | | | |||||| | | |||||||||||||||||||||||| ||||||||| |  |||    
T  50723209 aacacttgcagttgctaccggcaagagtaaagtcaacttcaaaagttaataaaccacagcaaatgtgttgcatttatttgttttcacaaagatcttaaag 50723110  T
Q  237 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattattt 336  Q
      |||||||||| ||||||||||| ||| ||||||||||| || |||||| | ||||||||||| ||| | |||||||  |||||||||| |||| ||||    
T  50723109 tcctttcaacttagcaaattttgggtcaaattgaacatttgtaacataatacttaagttgatggcgtagcaccacttccagcacatttattaaatcattt 50723010  T
Q  337 ggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagaga 399  Q
    ||||||||||| |||||||||||||||||| | |||||||||||| ||||| |||||| ||||    
T  50723009 ggataaaactcgatcatcctcaataatttgtttacatcaaaagctacaaatgactttgtgaga 50722947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 155 - 403
Target Start/End: Original strand, 4377498 - 4377758
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaact-ataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcacttt 242  Q
    ||||||||||||||||||||||| | | ||||||| | ||| ||||||||||||| ||||||||||||||||           |||| || |||| ||||    
T  4377498 cggcaagagcaaagtcaacttcaaaagtttataaaatcatagcaaatgtgttgcacttatttgtttccacaagtcatgcacaaagatctgaaagcccttt 4377597  T
Q  243 caactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataa 342  Q
    |||||| ||||||||||| |||||| |||||| | || |||||||| ||||||||  | ||| ||||||||  ||||||| |||||||||||||||||||    
T  4377598 caacttggcaaattttgggtcagatcgaacatctgtaacataattcttaagttgagtgcgtatcgccactttcggcacatctataaaattatttggataa 4377697  T
Q  343 aactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagactca 403  Q
    |||||  ||||| ||||||| ||| |||||||||||||||||||| |||||| | ||||||    
T  4377698 aactctgtcatcttcaataacttgttcacatcaaaagctgcaaatgactttgcgggactca 4377758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 264 - 394
Target Start/End: Original strand, 2158917 - 2159047
Alignment:
Q  264 agattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaactcaatcatcctcaataat 363  Q
    ||||||||||||| || |||||  | ||||||||||| |||||||||||||  |||||| |||||||| |||||||||||||||| |||| |||||||||    
T  2158917 agattgaacatttgtaacataaaacctaagttgatggcgtaacgccacttcctgcacatctataaaatcatttggataaaactcagtcattctcaataat 2159016  T
Q  364 ttggtcacatcaaaagctgcaaattactttg 394  Q
    ||| |||||||||||||||||||| ||||||    
T  2159017 ttgttcacatcaaaagctgcaaatgactttg 2159047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 221 - 403
Target Start/End: Original strand, 5882718 - 5882900
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||| || |||| | |||||||| ||||||||| | ||||||  ||||||||||  ||||||| ||||||||||| |||||| |||||| | |||    
T  5882718 cacaaagatatgaaagcccattcaacttagcaaattttcggtcagatcaaacatttttaatataattcttaagttgatggcgtaacgacacttccgacac 5882817  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagactca 403  Q
    || ||| |||||||||||||||||| ||  |||  ||||| ||||| || ||| |||| |||||||| |||||| || |||||    
T  5882818 atctatcaaattatttggataaaacccagccataatcaattatttgttcgcataaaaaactgcaaataactttgcgaaactca 5882900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 234 - 376
Target Start/End: Original strand, 33518382 - 33518523
Alignment:
Q  234 aagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaatta 333  Q
    |||| |||| ||||| ||||||||||| |||||| ||||||| | | |||||||| ||| ||||  ||||||||||||||   |||||| |||||||| |    
T  33518382 aagcccttttaacttagcaaattttgggtcagatcgaacattgtaa-cataattcttaaattgagtgtgtaacgccactttcagcacatctataaaatca 33518480  T
Q  334 tttggataaaactcaatcatcctcaataatttggtcacatcaa 376  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||    
T  33518481 tttggataaaactcagtcatcctcaataacttgttcacatcaa 33518523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 137 - 387
Target Start/End: Original strand, 36248071 - 36248332
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------- 225  Q
    |||| ||| |||| ||| |||||||||||||| |||||||| | | |||||||  |||||||| |||||||| ||||||||||||||||               
T  36248071 aacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaatcataacaaaagtgttgcacttatttgtttccacaagttttacacaa 36248170  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    || | |  || | ||||||||||  |||||||| | |||||| |||||| | || ||||| || |||||| |  | ||||| |||| |  ||||||| ||    
T  36248171 aggtctaaaaactctttcaacttaacaaattttaggtcagatcgaacatctgtaacataactcttaagttaagtgcgtaacaccaccttcggcacatcta 36248270  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaat 387  Q
    |||||| |||||||||||||||| ||||||||||||| ||| || |||||||||||||||||    
T  36248271 taaaatcatttggataaaactcagtcatcctcaataacttgttcgcatcaaaagctgcaaat 36248332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 2815920 - 2816028
Alignment:
Q  295 tgatggtgtaacgccacttctggcacatttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    |||||| ||||| |||||||  |||| | ||||||||||||||||||||||| | ||||| ||||||||||  |||||||||||||||||||| ||||||    
T  2815920 tgatggcgtaacaccacttccagcacttctataaaattatttggataaaactaagtcatcttcaataatttattcacatcaaaagctgcaaatgactttg 2816019  T
Q  395 agagactca 403  Q
     | ||||||    
T  2816020 cgggactca 2816028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 2815772 - 2815920
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc-----------cacaa 225  Q
    |||| ||| |||| ||| |||||||||||||| |||||| | | | |||||||| ||| ||||||||||||| |||||||||||           |||||    
T  2815772 aacacttgcagttgctaccggcaagagcaaagccaacttgaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 2815871  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacat 274  Q
    |||| || |||| |||||||||| ||||||||||| |||||| ||||||    
T  2815872 agatctgaaagccctttcaacttagcaaattttgggtcagatcgaacat 2815920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 2158847 - 2158911
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgttt 219  Q
    |||||||||||||  |||||||| | ||||| |||| ||| ||||||||||||| ||||||||||    
T  2158847 cggcaagagcaaaaccaacttcaaaagcttacaaaccatagcaaatgtgttgcacttatttgttt 2158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 33518292 - 33518368
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttg 232  Q
    ||||||||| |||| |||||| | | | |||||||| |  |||||||||||||| |||||||||||||| ||||||||    
T  33518292 cggcaagagtaaagccaactttaaaagtttataaaccacgacaaatgtgttgcacttatttgtttccac-aagatttg 33518368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 137 - 403
Target Start/End: Complemental strand, 26285728 - 26285462
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 236  Q
    |||| |||||||| ||| ||| ||||||||||||||||||| | |||||||||| |||| |||| ||||||| |||||||||||||||| ||| || |||    
T  26285728 aacacttgtagttgctaacggaaagagcaaagtcaacttcaaaagcttataaaccataataaatttgttgcacttatttgtttccacaacgatctgaaag 26285629  T
Q  237 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattattt 336  Q
    | |||||||||| | ||||||| | |||||| ||| |||| || |||||||  |||||||| || ||||| ||||||| | |||||||||||||| ||||    
T  26285628 ccctttcaacttagtaaatttttggtcagatcgaaaatttgtaacataattattaagttgacggcgtaacaccacttccgacacatttataaaatcattt 26285529  T
Q  337 ggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagactca 403  Q
    ||||||||||||| |||||||||||||||| ||||||||||| |||||||| ||| || ||||||||    
T  26285528 ggataaaactcaaccatcctcaataatttgttcacatcaaaaactgcaaatgactctgtgagactca 26285462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 157 - 393
Target Start/End: Original strand, 23778476 - 23778721
Alignment:
Q  157 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa---------agatttggaagcactttcaact 247  Q
    |||||||||||| |||||||| | | |||||||| ||| ||||||||||||||||||||||||||||||         |||| |  |||| |||||||||    
T  23778476 gcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccacaagtttcacaaagatcttaaagccctttcaact 23778575  T
Q  248 ttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaactc 347  Q
    |  |||||||||| |||||| ||||||||  | |||||||| |||||||| || |||||| |||||| ||||||| |||||||| |||||||||||||||    
T  23778576 taacaaattttgggtcagatcgaacatttgcaacataattcttaagttgacggggtaacgtcacttccggcacatctataaaatcatttggataaaactc 23778675  T
Q  348 aatcatcctcaataatttggtcacatcaaaagctgcaaattacttt 393  Q
    | ||||||||||||||||| |||||||||||| | ||||| |||||    
T  23778676 agtcatcctcaataatttgttcacatcaaaagttacaaatgacttt 23778721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 221 - 394
Target Start/End: Complemental strand, 36477854 - 36477681
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||| || |||| |||||||||| ||||||||||| |||||| |||||||| || |||||||| ||||||||  ||||||||||||||  |||||    
T  36477854 cacaaagatatgaaagccctttcaacttagcaaattttgggtcagatcgaacatttgtaacataattcttaagttgagtgtgtaacgccactttcggcac 36477755  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    || ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||    
T  36477754 atctataaaattattttgataaaactcaatcatcctcaataatttgttcacatcaaaagttacaaatgactttg 36477681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 158 - 386
Target Start/End: Original strand, 24310096 - 24310335
Alignment:
Q  158 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttcaac 246  Q
    |||||||||||||||||||| | | |||||||| ||| ||||||||| ||| ||||||||||||||||           |||| || |||| ||||||||    
T  24310096 caagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtcgcacttatttgtttccacaagttttgcacacagatctgaaagccctttcaac 24310195  T
Q  247 tttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaact 346  Q
     | ||||||||||  |||||| |||||||| || |||||||| |||||||   |||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  24310196 atagcaaattttgagtcagatcgaacatttgtaacataattcttaagttgcgtgtgtaatgccacttccggcacatctataaaatcatttggataaaact 24310295  T
Q  347 caatcatcctcaataatttggtcacatcaaaagctgcaaa 386  Q
    ||| ||| |||||||||||  ||||||||||| |||||||    
T  24310296 caaccattctcaataatttcttcacatcaaaaactgcaaa 24310335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 221 - 394
Target Start/End: Complemental strand, 7728871 - 7728698
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||| || || | |||||||||| ||||||||||| ||||||  ||||||| || |||||||| ||||||||  |  |||||||||||| | |||    
T  7728871 cacaaagatctgaaaaccctttcaacttagcaaattttgggtcagatataacatttgtaacataattcttaagttgagtgcataacgccacttccgacac 7728772  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    || |||||||| |||||||||||||||| | || |||||||||||| |||||||||||||||||||| ||||||    
T  7728771 atctataaaatcatttggataaaactcagttattctcaataatttgttcacatcaaaagctgcaaatgactttg 7728698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 222 - 403
Target Start/End: Original strand, 36475763 - 36475945
Alignment:
Q  222 acaaagatttggaagcactttcaactttgcaaattttg-gatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||||| |||| |||||||||| |||| ||||  | ||| ||| ||||||| || |||||||| |||||||||||||||||||||| || |||||    
T  36475763 acaaagatttgaaagccctttcaacttagcaatttttttggtcaaattaaacatttgtaacataattcctaagttgatggtgtaacgccacatccggcac 36475862  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagactca 403  Q
    |  | |||||| |||||||||||||||| ||||||||||||||||  |||||| |||| |||||||| |||||| | ||||||    
T  36475863 acctgtaaaatcatttggataaaactcagtcatcctcaataatttcttcacataaaaaactgcaaatgactttgcgggactca 36475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 221 - 394
Target Start/End: Original strand, 8034882 - 8035055
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||| || |||| |||||||||| ||||||||| | ||| || |||||||| ||  | ||||| ||||||||  |||| |||||||||  | |||    
T  8034882 cacaaagatctgaaagccctttcaacttagcaaattttaggtcacatagaacatttgtaatacaattcttaagttgagtgtgtgacgccactttcgacac 8034981  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    || |||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||| |||| ||||||    
T  8034982 atctataaaatcatttggataaaactgagtcatcctcaataatttgttcacatcaaaagctgtaaatgactttg 8035055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 155 - 394
Target Start/End: Original strand, 26903367 - 26903617
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 243  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  26903367 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 26903466  T
Q  244 aactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaa 343  Q
    ||||||||||||||||||||||||| ||||||| || |||||||   ||||||   | | ||| ||||||| | ||||| || ||||| |||||||||||    
T  26903467 aactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 26903566  T
Q  344 actcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
     ||||  |||||||||||||||| ||||||||||||| | |||| ||||||    
T  26903567 gctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttg 26903617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 155 - 394
Target Start/End: Complemental strand, 36617673 - 36617423
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 243  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  36617673 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 36617574  T
Q  244 aactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaa 343  Q
    ||||||||||||||||||||||||| ||||||| || |||||||   ||||||   | | ||| ||||||| | ||||| || ||||| |||||||||||    
T  36617573 aactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 36617474  T
Q  344 actcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
     ||||  |||||||||||||||| ||||||||||||| | |||| ||||||    
T  36617473 gctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttg 36617423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 394
Target Start/End: Original strand, 38573175 - 38573443
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc-----------cacaa 225  Q
    |||| ||| |||| |||||||||||||||||| |||||||| | | |||||||| ||| ||||||||||||| |||||||||||           |||||    
T  38573175 aacacttgcagttgctatcggcaagagcaaagccaacttcaaaagtttataaacaatagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 38573274  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    ||||||| |||| ||| ||||||  ||| |||||| |||||| |||||| | || |||||||| |||| |||  | ||||||| ||||| || |||| ||    
T  38573275 agatttgaaagcccttacaacttaacaacttttgggtcagatcgaacatctgtaacataattcttaagctgagtgcgtaacgctacttccggaacatcta 38573374  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    ||||||| ||| ||||||| |||  ||||||||||||||   |||||||||| | ||||| | ||||||    
T  38573375 taaaattgttttgataaaattcagccatcctcaataattaattcacatcaaatgttgcaagtgactttg 38573443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 25032145 - 25032075
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    |||||||||||||  |||||||| | | | |||||| |||| |||||||||||||||||||||||||||||    
T  25032145 cggcaagagcaaaaccaacttcaaaagttaataaaccataataaatgtgttgcatttatttgtttccacaa 25032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 7856697 - 7856785
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    |||| ||| |||| ||| |||||| ||||||| |||||||| | | |||||||| |||  ||| |||||||| ||||||||||||||||    
T  7856697 aacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaaccataggaaacgtgttgcacttatttgtttccacaa 7856785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 35502410 - 35502350
Alignment:
Q  160 agagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 220  Q
    |||||||| ||||||||| | |||||||||  |||||||||| |||||| |||||||||||    
T  35502410 agagcaaaatcaacttcaaaagcttataaatcataacaaatgggttgcacttatttgtttc 35502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 137 - 379
Target Start/End: Complemental strand, 9539520 - 9539278
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 236  Q
    |||| ||| |||| |||||||||||||||||  |||||||| | | |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||    
T  9539520 aacacttgcagttgctatcggcaagagcaaaaccaacttcaaaagtttataaaccaaaacaaatgtgttgcacttatttgtttccacaaagatctggaag 9539421  T
Q  237 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattattt 336  Q
    | | |||||||| |||||||||||||||||| |||||||| || |||||||| |||||||||||  ||||||||||||   ||| | |||||||||||||    
T  9539420 ccccttcaacttagcaaattttggatcagatcgaacatttgtaacataattcttaagttgatggcataacgccacttccaacacttctataaaattattt 9539321  T
Q  337 ggataaaactcaatcatcctcaataatttggtcacatcaaaag 379  Q
    ||||||||||||||||| |||||||||||  |||| |||||||    
T  9539320 ggataaaactcaatcattctcaataattttttcacgtcaaaag 9539278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 137 - 394
Target Start/End: Original strand, 6226881 - 6227149
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------- 225  Q
    |||| ||| |||| ||||||||||||||||||||||||||| | | |||||||| ||| ||||||||||||| ||||||||||||||||               
T  6226881 aacacttgcagttgctatcggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 6226980  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    |||| || |||| ||| ||||||  ||| |||||| |||||| ||||||||||| |||||||| ||||||||  ||||||||| ||||| || |||| ||    
T  6226981 agatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttttaacataattcttaagttgagtgtgtaacgctacttccggaacatcta 6227080  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    |||||| |||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||| ||||||    
T  6227081 taaaataatttggataaaattcagtcatcctcaataatttgttcacatcaaaagttgcaaatgactttg 6227149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 137 - 394
Target Start/End: Complemental strand, 10781076 - 10780820
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 236  Q
    |||| ||| |||| ||| |||||||||||||  |||||||| | | ||||||||||||  |||||||||||| |||||||||||||||||||| || |||    
T  10781076 aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagtttataaactatagtaaatgtgttgcacttatttgtttccacaaagatctgaaag 10780977  T
Q  237 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattattt 336  Q
      |||||||||| ||||||||| | |||||| |||||| | || |||||||  ||||||||  | ||||||||||||  | ||||| |||||||||||||    
T  10780976 tcctttcaacttagcaaattttaggtcagatcgaacatatgtaacataattattaagttgagtgcgtaacgccactttcgacacatctataaaattattt 10780877  T
Q  337 ggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    |||||||||||| ||| ||| | ||| ||| |||||||||||| ||||||| ||||||    
T  10780876 ggataaaactcagtcacccttattaa-ttgttcacatcaaaagttgcaaataactttg 10780820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 155 - 394
Target Start/End: Original strand, 25031162 - 25031411
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 243  Q
    ||||||||||||||||||||||| | | |||||||| ||| ||||||||||||||||||||||||||||||           |||| || |||| || |     
T  25031162 cggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccacaagttttgcacaaagatctgaaagccctctg 25031261  T
Q  244 aactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaa 343  Q
    ||||| |||| ||| || |||||| |||||||| || ||||| || ||||||||  ||||||||||||||| | ||||| |||||||| |||||||||||    
T  25031262 aacttagcaattttagg-tcagatcgaacatttgtaacataactcttaagttgagtgtgtaacgccacttccgacacatctataaaatcatttggataaa 25031360  T
Q  344 actcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    ||||||||||||||||||||||| |||||| |||| |||||||| ||||||    
T  25031361 actcaatcatcctcaataatttgttcacattaaaaactgcaaatgactttg 25031411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 137 - 394
Target Start/End: Original strand, 34912509 - 34912778
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca-----------caa 225  Q
    |||| ||| |||| |||||||||||  ||||| |||||||| | ||||||||||||||   ||||||||||| |||||||||||||           |||    
T  34912509 aacacttgcagttactatcggcaaggacaaagccaacttcaaaagcttataaactatagtgaatgtgttgcacttatttgtttccagaagttttggacaa 34912608  T
Q  226 agatttggaag-cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattt 324  Q
    |||| || ||| || ||| ||||| |||||||||   | ||||||||||||| || |||||||| |||||||||||||||||||||||||  | |||| |    
T  34912609 agatctgaaagtcattttaaacttagcaaattttaagttagattgaacatttataacataattcctaagttgatggtgtaacgccacttccagaacatct 34912708  T
Q  325 ataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    ||||||| |||||||||||  |||| |||||||||||||||| |||||||||||| ||||||| ||||||    
T  34912709 ataaaatcatttggataaatttcaaccatcctcaataatttgttcacatcaaaaggtgcaaatgactttg 34912778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 234 - 387
Target Start/End: Original strand, 9477932 - 9478085
Alignment:
Q  234 aagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaatta 333  Q
    |||| |||||||||| ||||||||||| | |||| |||||||| || |||||||| ||||||||  | ||||| | ||||| ||||||| |||||||| |    
T  9477932 aagccctttcaacttagcaaattttgggttagatcgaacatttgtaccataattcttaagttgacagcgtaacactacttccggcacatctataaaatca 9478031  T
Q  334 tttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaat 387  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  9478032 tttggataaaactcagtcatactcaataatttgttcacatcaaaagctgcaaat 9478085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 155 - 394
Target Start/End: Complemental strand, 1016901 - 1016651
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 243  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  1016901 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 1016802  T
Q  244 aactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaa 343  Q
    ||||||| ||||||||||||||||| ||||||| || |||||||   ||||||   | | ||| ||||||| | ||||| || ||||| |||||||||||    
T  1016801 aactttgaaaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 1016702  T
Q  344 actcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
     ||||  |||||||||||||||| ||||||||||||| | |||| ||||||    
T  1016701 gctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttg 1016651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 42311397 - 42311301
Alignment:
Q  270 aacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaactcaatcatcctcaataatttg 366  Q
    ||||||| || ||||||||| |||||||  | |||||| |||||| | || || |||||||| ||||||||||||||||  ||||||||||||||||    
T  42311397 aacatttgtaacataattcacaagttgagtgcgtaacgtcacttccgacatatctataaaatcatttggataaaactcagacatcctcaataatttg 42311301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 8065199 - 8065257
Alignment:
Q  157 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttattt 215  Q
    |||||||||||| |||||||| | | |||||||| ||||||||||||||||||||||||    
T  8065199 gcaagagcaaagccaacttcaaaagtttataaaccataacaaatgtgttgcatttattt 8065257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 31738109 - 31738169
Alignment:
Q  160 agagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 220  Q
    |||||||||||||||| | |  ||||||||  |||||||||||||||||||||||||||||    
T  31738109 agagcaaagtcaactttaaaaacttataaatcataacaaatgtgttgcatttatttgtttc 31738169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 27464147 - 27464077
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    |||| ||| ||||| |||||||| | |||||||||  ||||||||||| ||||| ||||||||||||||||    
T  27464147 cggctagaacaaagccaacttcaaaagcttataaatcataacaaatgtattgcacttatttgtttccacaa 27464077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 9477870 - 9477912
Alignment:
Q  183 ttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||    
T  9477870 ttataaaccatagcaaatgtgttgcacttatttgtttccacaa 9477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 221 - 394
Target Start/End: Complemental strand, 30074451 - 30074278
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    |||||||||||| |||| |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| |||||||||||||||||||||||||   |||    
T  30074451 cacaaagatttgaaagccctttcaacttagcaaattttcgttcagatcgaacatttgtaatataattcttaagttgatggtgtaacgccacttccaacac 30074352  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    || ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||||    
T  30074351 atctataaaattatttggataatactcagtcatcctcaataatttgttcacatcaaaaactacaaatgactttg 30074278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 137 - 378
Target Start/End: Complemental strand, 2945301 - 2945049
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------- 225  Q
    |||| ||| |||| ||| || |||||||||||||||||||| | | |||||||  ||| ||||||||||||||||||||| ||||||||               
T  2945301 aacacttgcagttgctaccgacaagagcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgcttccacaagttttgtacaa 2945202  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    |||| || |||| |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| ||||||||||  |||||| |||||| | ||||| ||    
T  2945201 agatctgaaagccctttcaacttagcaaattttcggtcagatcgaacatttgtaatataattcttaagttgatgacgtaacgtcacttccgacacatcta 2945102  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaa 378  Q
    |||||| ||||||||||||||| |||||||||||||||||| |||||||||||    
T  2945101 taaaatcatttggataaaactcgatcatcctcaataatttgttcacatcaaaa 2945049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 146 - 387
Target Start/End: Complemental strand, 33941535 - 33941283
Alignment:
Q  146 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttgga 234  Q
    |||| ||| |||||||||||||  |||||||| | | |||||| | ||| ||||||||||||| ||||||||||||||||           |||| || |    
T  33941535 agttgctaccggcaagagcaaatccaacttcaaaagtttataatccatagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaa 33941436  T
Q  235 agcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattat 334  Q
    ||| |||||||||| ||||||||||| |||||| |||||||| || |||||||| |||||||| | ||||||||||||||  |||||| |||||||| ||    
T  33941435 agccctttcaacttagcaaattttgggtcagatcgaacatttataacataattcttaagttgacgatgtaacgccacttccagcacatctataaaatcat 33941336  T
Q  335 ttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaat 387  Q
    |||| |||| |||   ||| |||||||||||| ||||||||||||||||||||    
T  33941335 ttgggtaaatctcgcccattctcaataatttgttcacatcaaaagctgcaaat 33941283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 221 - 393
Target Start/End: Complemental strand, 38293627 - 38293455
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    |||||| || || |||| ||| ||||||  ||| |||||| ||||||||||||||| || |||||||| ||||||||  | ||||||||||||| || ||    
T  38293627 cacaaaaatctgaaagcccttacaacttaacaacttttgggtcagattgaacatttgtaacataattcttaagttgagtgcgtaacgccacttccggaac 38293528  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattacttt 393  Q
    || |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  38293527 atctataaaattatttggataaagctcagtcatcctcaataatttgttcacatcaaaagttgcaaatgacttt 38293455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 221 - 392
Target Start/End: Original strand, 10702848 - 10703019
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||| || ||||  ||||||||| ||||||||||| |||||| |||||||| || |||||||| |||||| |  ||||||||| |||||  ||||    
T  10702848 cacaaagatctgaaagccttttcaacttagcaaattttgggtcagatagaacatttgtaacataattcttaagttcagtgtgtaacgcaacttccagcac 10702947  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactt 392  Q
    || || ||||| |||||||||||||||| | ||||||||||||||| |||||||||||| ||||||| ||||    
T  10702948 atctagaaaatcatttggataaaactcactaatcctcaataatttgttcacatcaaaagttgcaaataactt 10703019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 234 - 394
Target Start/End: Original strand, 24039503 - 24039663
Alignment:
Q  234 aagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaatta 333  Q
    |||| |||||||||| ||||||||||| | |||| ||| |||| || |||||||| ||||||||  ||||||  ||||||  ||||||| |||||||| |    
T  24039503 aagccctttcaacttagcaaattttgggttagatagaatatttgtaacataattcttaagttgagtgtgtaataccactttcggcacatctataaaatca 24039602  T
Q  334 tttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    |||||||||||||||  |||||||||||||||| ||||||||||| |||||||| ||||||    
T  24039603 tttggataaaactcaggcatcctcaataatttgttcacatcaaaatctgcaaatgactttg 24039663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 146 - 393
Target Start/End: Original strand, 1691857 - 1692117
Alignment:
Q  146 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca-----------caaagatttgga 234  Q
    |||| |||| |||| |||||||  |||||||| | | |||||||| ||| ||||||||||||| |||||||||||||           ||||||| || |    
T  1691857 agttgctattggcatgagcaaaaccaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccataagttttgcacaaagatctgaa 1691956  T
Q  235 agcactttcaact---ttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaat 331  Q
    ||  |||||||||   | ||||||| ||| |||||| |||||||| || |||||||| ||||||||  | |||||||||||||||||||||  ||| |||    
T  1691957 agtcctttcaactaattagcaaattatgggtcagatcgaacatttgtaacataattcttaagttgagtgcgtaacgccacttctggcacatccatacaat 1692056  T
Q  332 tatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattacttt 393  Q
    ||||| || |||||||| ||||||||||||||||  |||||||||||||| ||||| |||||    
T  1692057 tattt-gaaaaaactcagtcatcctcaataatttcttcacatcaaaagctacaaatgacttt 1692117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 221 - 394
Target Start/End: Complemental strand, 43265753 - 43265580
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    |||||||||  | |||| |||||||||||||||||||||||||||||| ||||||| || |||||||   ||||||   | | ||| ||||||| | |||    
T  43265753 cacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattttgaagttgtctgcgcaactccacttccgacac 43265654  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    || || ||||| ||||||||||| ||||  |||||| ||||||||| ||||||||||||| | |||| ||||||    
T  43265653 atctacaaaatcatttggataaagctcagccatccttaataatttgttcacatcaaaagcagaaaatgactttg 43265580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 221 - 393
Target Start/End: Complemental strand, 32221826 - 32221655
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||| ||| || |||| |||||||||| |||| |||| | |||||| ||||| | | |  ||||||  ||||||||||||||||||||||||| | |||    
T  32221826 cacaaggatctgaaagccctttcaacttagcaatttttcggtcagatcgaacactgtaat-ataatttttaagttgatggtgtaacgccacttccgacac 32221728  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattacttt 393  Q
    |  |||||||| |||| |||||||| ||||| |||| ||||||||| |||||||||||||| ||||| |||||    
T  32221727 aactataaaatcatttcgataaaacccaatcttccttaataatttgttcacatcaaaagctacaaatgacttt 32221655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 156 - 393
Target Start/End: Complemental strand, 46090079 - 46089832
Alignment:
Q  156 ggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------agatttggaagcactttcaa 245  Q
    ||||||||||||| | |||||  | |||||||||| ||| ||||||||||||| |||||||||| |||||          | || || |||  |||||||    
T  46090079 ggcaagagcaaagccgacttccaaagcttataaaccatagcaaatgtgttgcacttatttgttttcacaagttttgcacaaaatctgaaagtcctttcaa 46089980  T
Q  246 ctttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaac 345  Q
    ||| ||||||||  | |||  ||||||| || |  |||||||| |||||||||||  |||||||||||| | || |  ||||||||||||||| |||| |    
T  46089979 cttagcaaatttcaggtcaagttgaacaattattacataattcctaagttgatggcataacgccacttccgacataactataaaattatttgggtaaacc 46089880  T
Q  346 tcaatcatcctcaataatttggtcacatcaaaagctgcaaattacttt 393  Q
    ||| |||||||| |||||||| |||||||||||| | ||||| |||||    
T  46089879 tcagtcatcctcgataatttgttcacatcaaaagttacaaataacttt 46089832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 38300264 - 38300194
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    ||||||||||||||||||||||| | | |||||||| ||| ||||||||||||| ||||||||||||||||    
T  38300264 cggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaa 38300194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 3045064 - 3045124
Alignment:
Q  318 cacatttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaa 378  Q
    ||||| ||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||    
T  3045064 cacatctataaaattatttggataaaattcaacgatcctcaataatttgttcacatcaaaa 3045124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 8256765 - 8256835
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    ||||||||||||| ||||||||| | |||||||||| ||| |||||||| |||| |||||| |||||||||    
T  8256765 cggcaagagcaaaatcaacttcaaaagcttataaacaatagcaaatgtgctgcacttatttatttccacaa 8256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 24658636 - 24658709
Alignment:
Q  152 tatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    ||||||||||||||||  |||||||| | | |||||||  ||| ||||||||||||| ||||||||||||||||    
T  24658636 tatcggcaagagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgttgcacttatttgtttccacaa 24658709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 1247910 - 1247850
Alignment:
Q  165 aaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    ||||||||||||| | |||||||||  ||| ||||||||||||| ||||||||||||||||    
T  1247910 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccacaa 1247850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 25233168 - 25233230
Alignment:
Q  158 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 220  Q
    ||||||||||| ||| |||| | |||||||||  ||||||||||||||||| |||||||||||    
T  25233168 caagagcaaagccaatttcaaaagcttataaatcataacaaatgtgttgcacttatttgtttc 25233230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 25617885 - 25617947
Alignment:
Q  164 caaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaa 226  Q
    |||| ||||||||| | |||||||||  ||| |||||||||| |||||||||||||| |||||    
T  25617885 caaaatcaacttcaaaagcttataaatcatagcaaatgtgttacatttatttgtttcaacaaa 25617947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 43265830 - 43265760
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||| ||| ||||| ||||||||||||||||    
T  43265830 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaagtgtcttgcacttatttgtttccacaa 43265760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 221 - 394
Target Start/End: Original strand, 18458889 - 18459062
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||| || |||| |||||||||| ||||||||| | | |||| |||||||| || |||||||  ||||||||  ||||||||||||||| |||||    
T  18458889 cacaaagatctgaaagccctttcaacttagcaaattttaggttagatagaacatttgtaacataattattaagttgagtgtgtaacgccacttccggcac 18458988  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    || |||||||| |||||||||||||||| | ||||||||||||||| ||| |||||||| ||||||| ||||||    
T  18458989 atctataaaatcatttggataaaactcagtaatcctcaataatttgttcatatcaaaagttgcaaatgactttg 18459062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 221 - 387
Target Start/End: Original strand, 6141587 - 6141753
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||| || |||| |||||||||| ||||||||||  |||||| |||||||| || |||||||| ||||||||  | ||||||||||||| |  ||    
T  6141587 cacaaagatctgaaagccctttcaacttagcaaattttgtgtcagatagaacatttgtaacataattcttaagttgagtgcgtaacgccacttccgatac 6141686  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaat 387  Q
    || |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| || |||||    
T  6141687 atctataaaatcatttggataaaactcagtcatcctcaataatttgttcacatcaaaaactccaaat 6141753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 162 - 385
Target Start/End: Complemental strand, 3356975 - 3356741
Alignment:
Q  162 agcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccaca-----------aagatttggaagcactttcaactttg 250  Q
    |||||||||||||||| | | |||||||  ||| |||||||||||||||||||||||||||||           ||||| || |||| ||||||||||      
T  3356975 agcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaggttttgcacaaagatatgaaagccctttcaacttaa 3356876  T
Q  251 caaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaactcaat 350  Q
    |||||||| | ||||||  ||||||| ||  |||||||||||||||||||  |||||||||| | | ||||| |||||||| ||||| |||||||||| |    
T  3356875 caaattttcggtcagatcaaacatttataatataattcataagttgatggcataacgccactaccgacacatctataaaatcatttgtataaaactcatt 3356776  T
Q  351 catcctcaataatttggtcacatcaaaagctgcaa 385  Q
    |||||||||||||||| |||||| |||| ||||||    
T  3356775 catcctcaataatttgttcacataaaaaactgcaa 3356741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 155 - 377
Target Start/End: Original strand, 32033191 - 32033422
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa---------agatttggaagcactttcaa 245  Q
    |||||||||||||  |||||||| | | |||||||  ||| ||||||||||||||||||||||||||||||         ||| ||  |||| |||||||    
T  32033191 cggcaagagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaagttttgcaaagacttctaagccctttcaa 32033290  T
Q  246 ctttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaac 345  Q
    ||| ||||||||||| || ||| |||||||| || |||||||| ||||||||||| | ||| ||||||| | ||||| |||| ||| |||||||||||||    
T  32033291 cttagcaaattttgggtcggatcgaacatttataacataattcttaagttgatggcgaaacaccacttccgacacatctatacaatcatttggataaaac 32033390  T
Q  346 tcaatcatcctcaataatttggtcacatcaaa 377  Q
    ||  ||||| ||||||| ||  ||||||||||    
T  32033391 tctgtcatcatcaataacttattcacatcaaa 32033422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 221 - 394
Target Start/End: Original strand, 4075860 - 4076033
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||||||| || |||||||   ||||||   | | ||| ||||||| | |||    
T  4075860 cacaaagattcgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacac 4075959  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    || || ||||| ||||||||||| ||||  |||||||||||||||| ||||||||||||| | |||| ||||||    
T  4075960 atctacaaaatcatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttg 4076033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 11562318 - 11562463
Alignment:
Q  240 tttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttgga 339  Q
    ||||||||| ||||||||||| ||| ||  ||||||| || |||||||| ||||||||||| ||||||||||||| | ||||| ||| |||| |||| ||    
T  11562318 tttcaacttagcaaattttgggtcaaatcaaacatttgtaacataattcttaagttgatggcgtaacgccacttccgacacatctattaaatcatttaga 11562417  T
Q  340 taaaactcaatcatcctcaataatttggtcacatcaaaagctgcaa 385  Q
    ||||| ||| |||||||| |||||||| ||||||||||||| ||||    
T  11562418 taaaattcagtcatcctccataatttgttcacatcaaaagcagcaa 11562463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 251 - 392
Target Start/End: Complemental strand, 18703443 - 18703302
Alignment:
Q  251 caaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaactcaat 350  Q
    |||||||||| | ||||||||||||| || |||||||   |||||||||| | ||| ||||||||  ||| | || ||||| ||||||||||||||||      
T  18703443 caaattttgggttagattgaacatttataacataatttcgaagttgatggcgcaaccccacttctaacacttctaaaaaatcatttggataaaactcatc 18703344  T
Q  351 catcctcaataatttggtcacatcaaaagctgcaaattactt 392  Q
    || ||||||||||||| |||||||||||| ||||||| ||||    
T  18703343 caacctcaataatttgttcacatcaaaagttgcaaatgactt 18703302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 155 - 287
Target Start/End: Original strand, 4075659 - 4075801
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagattt----------ggaagcactttca 244  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||  |||           |||||| ||||||    
T  4075659 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatcggaagccctttca 4075758  T
Q  245 actttgcaaattttggatcagattgaacatttttagcataatt 287  Q
    |||||||||||||||||||||||| ||||||| || |||||||    
T  4075759 actttgcaaattttggatcagatttaacatttctaacataatt 4075801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 18703559 - 18703482
Alignment:
Q  143 tgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 220  Q
    ||||||| |||| ||||||||||||| |||||||| | |||||||||| ||| ||||| |||| || |||||||||||    
T  18703559 tgtagttgctataggcaagagcaaagccaacttcaaaagcttataaaccatatcaaatatgtttcacttatttgtttc 18703482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 11562222 - 11562292
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 225  Q
    ||||||||| |||| ||||||||   | | |||||||||| ||||| ||||||||||||||||||||||||    
T  11562222 cggcaagagtaaagccaacttcaatagttaataaactatagcaaatatgttgcatttatttgtttccacaa 11562292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 7700561 - 7700610
Alignment:
Q  157 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttg 206  Q
    ||||||||||||||||| ||| | |||||||||| |||||||||||||||    
T  7700561 gcaagagcaaagtcaacgtcaaaagcttataaaccataacaaatgtgttg 7700610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 137 - 372
Target Start/End: Original strand, 6689395 - 6689641
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------- 225  Q
    |||| ||| |||| ||| ||||||||||||||||||||||| | |||||||||  ||| ||||||||||| | |||||||||| |||||               
T  6689395 aacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgtacttatttgttttcacaagttttacacga 6689494  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    |||| || |||| |||||||||| |||||||| ||  ||||||||| |||| || |||||||  ||||||||||||||||||||||||  | || || ||    
T  6689495 agatctgaaagccctttcaacttagcaaatttagggccagattgaaaatttataacataatttttaagttgatggtgtaacgccactttcgacatatcta 6689594  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcaca 372  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||||    
T  6689595 taaaatcatttggataaaactcaatcatcttcaataatttgttcaca 6689641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 137 - 394
Target Start/End: Original strand, 21883456 - 21883724
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------- 225  Q
    |||| ||| |||| ||| |||||||||||||| |||||||| | | |||||||| ||| ||||||||||| | ||||||||||||||||               
T  21883456 aacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgttgtacttatttgtttccacaagttttgcacaa 21883555  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    |||| |  ||||  || ||||||  ||| |||||| ||||||||||||||| || |||||||| ||||||||  ||||||||||||||  ||  ||| ||    
T  21883556 agatctaaaagccattacaacttaacaacttttgggtcagattgaacatttgtaacataattcttaagttgagtgtgtaacgccactttcggagcatcta 21883655  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    |||||  |||||||||||| ||| ||||||||||||||||| |||||||||||||||||| | ||||||    
T  21883656 taaaaacatttggataaaattcagtcatcctcaataatttgttcacatcaaaagctgcaagtgactttg 21883724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 2919948 - 2919689
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca-----------caa 225  Q
    |||| ||| |||| ||| |||||||||||||  |||||||| | | | |||||| |||||||||||||||||||||||||||||||           |||    
T  2919948 aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagttaataaaccataacaaatgtgttgcatttatttgtttccataagttttgcacaa 2919849  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    ||||  | ||||  ||||||||| ||||||||||| ||| || |||||||| |  ||||| |  ||||||||||||||||||||| |||   ||||| ||    
T  2919848 agatccgaaagccgtttcaacttagcaaattttgggtcaaatcgaacatttgttacataactattaagttgatggtgtaacgccaattccaacacatcta 2919749  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaa 385  Q
    | |||| |||| |||||||||||  |||||||||||||||| |||||| |||||||||||    
T  2919748 ttaaatgattttgataaaactcatacatcctcaataatttgttcacattaaaagctgcaa 2919689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 155 - 394
Target Start/End: Original strand, 24901898 - 24902148
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 243  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  24901898 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 24901997  T
Q  244 aactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaa 343  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||  ||||||   | | ||| ||||||| | ||||| || ||||| |||||||||||    
T  24901998 aactttgcaaattttggatcagatttaacatttctaacataattctgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 24902097  T
Q  344 actcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
     ||||  |||||||||||||||| ||||||||||||| | |||| ||||||    
T  24902098 gctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttg 24902148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 155 - 394
Target Start/End: Original strand, 18817129 - 18817379
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 243  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  18817129 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 18817228  T
Q  244 aactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaa 343  Q
    ||||||||||||||||||||||||| ||||||| || |||||||   ||||||   | | ||| ||||||| | ||||| || ||||| |||||||||||    
T  18817229 aactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 18817328  T
Q  344 actcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
     ||||  |||||||||||||||| ||||||||||||| | |||| ||||||    
T  18817329 gctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttg 18817379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 224 - 365
Target Start/End: Complemental strand, 19267012 - 19266871
Alignment:
Q  224 aaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatt 323  Q
    |||||| || |||| |||| || || ||||||||||| ||| || |||||||| || |||||||  ||||||||||| ||||||||||||| | |||||     
T  19267012 aaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatc 19266913  T
Q  324 tataaaattatttggataaaactcaatcatcctcaataattt 365  Q
    ||| |||| |||||||||||| |||||||| |||||||||||    
T  19266912 tattaaatcatttggataaaattcaatcattctcaataattt 19266871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 137 - 378
Target Start/End: Complemental strand, 14607670 - 14607418
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc-----------cacaa 225  Q
    |||| ||| |||| ||| || |||||||||||||||||||| | | |||||||| |||||  |||||||||| |||||||||||            ||||    
T  14607670 aacacttgcagttgctaccgtcaagagcaaagtcaacttcaaaagtttataaaccataacttatgtgttgcacttatttgtttctacatgtttagaacaa 14607571  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    |||| || ||||   || ||||| ||||||||||| ||| || |||||||| || |||||||| |||||||||||| ||||| ||||||   ||  | ||    
T  14607570 agatctgaaagccaatttaacttagcaaattttgggtcatatcgaacatttgtaacataattcttaagttgatggtctaacgtcacttccaacatttcta 14607471  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaa 378  Q
     ||||| |||||||||||| ||| ||| ||||||||||||  |||||||||||    
T  14607470 aaaaatcatttggataaaagtcagtcaacctcaataatttcttcacatcaaaa 14607418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 137 - 403
Target Start/End: Original strand, 2148580 - 2148857
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------- 225  Q
    |||||||| |||| ||| || ||||||||||| || ||||| | |||||||||  |||  |||||||||||| |||||||||| |||||               
T  2148580 aacatttgcagttgctaccgacaagagcaaagccagcttcaaaagcttataaatcatagaaaatgtgttgcacttatttgttttcacaagttttgcacaa 2148679  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    |||| || |||| ||||  |||||||||||||||| ||||||| ||||||| || ||||||||  |||||||||| | |||||||||| |||||||||||    
T  2148680 agatctgaaagccctttacactttgcaaattttgggtcagatttaacatttataacataattctgaagttgatggcgcaacgccacttatggcacattta 2148779  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagactca 403  Q
     ||||| |||||||||||  || |||||||||||||||||  |||||||||||| | ||||| ||||||  |||||||    
T  2148780 aaaaatcatttggataaagttcgatcatcctcaataatttattcacatcaaaagttacaaatgactttgcaagactca 2148857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 239 - 393
Target Start/End: Complemental strand, 6802554 - 6802400
Alignment:
Q  239 ctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttgg 338  Q
    ||||| |||| ||||||||||| ||||||||||||||| || |||||||| ||||||||||| ||||| ||||||||| |||||  ||||||| |||||     
T  6802554 ctttcgacttggcaaattttgggtcagattgaacatttataacataattcctaagttgatggcgtaacaccacttctgacacatccataaaatcatttga 6802455  T
Q  339 ataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattacttt 393  Q
    |||||| |||| |||||| ||||||||| |||||||||||| ||||||| |||||    
T  6802454 ataaaagtcaaccatccttaataatttgttcacatcaaaagttgcaaatgacttt 6802400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 24556802 - 24556555
Alignment:
Q  146 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttgga 234  Q
    |||| ||| ||| |||||||||| |||||||| |  ||||||||| ||||||||||||||||| |||||||||| |||||           || | || |    
T  24556802 agttgctaccggtaagagcaaagccaacttcaaaatcttataaaccataacaaatgtgttgcacttatttgttttcacaagttttgcacaaagttatgaa 24556703  T
Q  235 agcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattat 334  Q
    ||| |||||||||| |||||| |||  ||||||||||||||| || |||||||| ||| ||||||| |||||||||||||   ||| | || ||||| ||    
T  24556702 agccctttcaacttagcaaatcttgagtcagattgaacatttataacataattcctaacttgatggcgtaacgccacttccaccacttctacaaaatcat 24556603  T
Q  335 ttggataaaactcaatcatcctcaataatttggtcacatcaaaagctg 382  Q
    |||||||||| ||| ||||||||||||||||| |||||| ||||||||    
T  24556602 ttggataaaattcagtcatcctcaataatttgttcacattaaaagctg 24556555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 239 - 387
Target Start/End: Complemental strand, 32161186 - 32161038
Alignment:
Q  239 ctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttgg 338  Q
    ||||||| || ||||||||||| ||||||||||||||| || |||||||| ||||||||||| ||||| |||||| ||  |||| |||||||| ||||||    
T  32161186 ctttcaatttagcaaattttgggtcagattgaacatttgtaacataattcttaagttgatggcgtaacaccacttttgatacatctataaaatcatttgg 32161087  T
Q  339 ataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaat 387  Q
     ||||| ||||||| | ||||||||||  |||||||||||| |||||||    
T  32161086 gtaaaagtcaatcaccttcaataatttattcacatcaaaagttgcaaat 32161038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 221 - 403
Target Start/End: Original strand, 29866459 - 29866641
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||| || || | |||||||||| ||||||||| | |||||  |||||||| ||  ||||||| |||||||||||||||| | |||||| | |||    
T  29866459 cacaaagatctgaaaaccctttcaacttagcaaattttcggtcagaacgaacatttgtaatataattcttaagttgatggtgtaatgtcacttccgacac 29866558  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagactca 403  Q
    || |||||||| ||||||||||| | |||||||| || |||| ||| ||||||||||| |||||||| |||||| || |||||    
T  29866559 atctataaaatcatttggataaaccccaatcatcttcgataagttgttcacatcaaaaactgcaaataactttgcgaaactca 29866641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 155 - 394
Target Start/End: Complemental strand, 45486091 - 45485841
Alignment:
Q  155 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 243  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  45486091 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 45485992  T
Q  244 aactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaa 343  Q
    ||||||||||||||||||||||||| ||||||| || |||||||   ||||||   | | ||| ||||||| | ||||| || ||||| |||||||||||    
T  45485991 aactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 45485892  T
Q  344 actcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
     ||||  |||||||||||||||| ||||||||||||| | |||| ||||||    
T  45485891 gctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttg 45485841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 254 - 393
Target Start/End: Original strand, 44873613 - 44873752
Alignment:
Q  254 attttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaactcaatcat 353  Q
    |||||||||||||| ||| || | || |||||||| ||||||||  | ||||| ||||||  || |||| |||||||| ||||||||||||||||| |||    
T  44873613 attttggatcagatcgaatatatgtaacataattcttaagttgagtgggtaacaccactttcggtacatctataaaatcatttggataaaactcaaccat 44873712  T
Q  354 cctcaataatttggtcacatcaaaagctgcaaattacttt 393  Q
    | ||||||||||| |||||||||||||||||||| |||||    
T  44873713 cttcaataatttgttcacatcaaaagctgcaaatgacttt 44873752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 6802658 - 6802580
Alignment:
Q  146 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccaca 224  Q
    |||| ||| |||| ||||||||  |||||||| | |||||||||  ||  ||||||||||||||||| |||||||||||    
T  6802658 agttgctaccggcgagagcaaaaccaacttcaaaagcttataaagcatttcaaatgtgttgcatttaattgtttccaca 6802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 158 - 394
Target Start/End: Original strand, 36745159 - 36745406
Alignment:
Q  158 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca-----------caaagatttggaagcactttcaac 246  Q
    |||||||||||||||||||| | | |||||||| ||| ||||||||||||| |||| ||||| ||           ||||||| || |||| ||||||||    
T  36745159 caagagcaaagtcaacttcaaaagtttataaaccatatcaaatgtgttgcacttatatgttttcataatttttgcacaaagatctgaaagccctttcaac 36745258  T
Q  247 tttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaact 346  Q
    || ||||| ||||| |||||| |||||||| || |||||||| ||||||||  | ||||||||||||    ||||| |||||||| |||||||||||||     
T  36745259 ttagcaaactttgggtcagatcgaacatttgtaacataattcttaagttgagtgcgtaacgccactttcaacacatctataaaatcatttggataaaacc 36745358  T
Q  347 caatcatcctcaataatttggtcacatcaaaagctgcaaattactttg 394  Q
    || ||||||||||||| ||| | |||||||||||||||||| ||||||    
T  36745359 cagtcatcctcaataacttgtttacatcaaaagctgcaaataactttg 36745406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 137 - 403
Target Start/End: Original strand, 43144762 - 43145039
Alignment:
Q  137 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccaca-----------a 225  Q
    |||| ||| |||| ||| ||||||||||||||||||||||| | | |||||||| ||| |||||||||| ||||||||||||||||||           |    
T  43144762 aacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttacatttatttgtttccacaagttttgcacaa 43144861  T
Q  226 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcacattta 325  Q
    ||||||| || | |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| |||||||||| ||||| | ||||||   ||||| ||    
T  43144862 agatttgaaaactctttcaacttagcaaattttcggtcagatcgaacatttgtaatataattcttaagttgatgttgtaatgtcacttccaacacatcta 43144961  T
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagactca 403  Q
    | |||| ||||||||||| | | |||||| || |||||||| |||||| |||| |||||||| |||||| || |||||    
T  43144962 tgaaatcatttggataaaccccgatcatcttcgataatttgttcacatgaaaaactgcaaataactttgcgaaactca 43145039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 185 - 394
Target Start/End: Complemental strand, 36633849 - 36633629
Alignment:
Q  185 ataaactataacaaatgtgttgcatttatttgtttccacaaa-----------gatttggaagcactttcaactttgcaaattttggatcagattgaaca 273  Q
    |||||| ||| |||||||||||||||||||||||||||||||           ||| || ||| |  ||| |||| ||||||||||||||| || ||| |    
T  36633849 ataaaccatagcaaatgtgttgcatttatttgtttccacaaattttgcacaaagatgtgaaagtagattcgacttagcaaattttggatcaaatcgaata 36633750  T
Q  274 tttttagcataattcataagttgatggtgtaacgccacttctggcacatttataaaattatttggataaaactcaatcatcctcaataatttggtcacat 373  Q
    ||| || || ||||| |||||| |||| ||||||||||||| ||||||| ||| |||| |||||||||||||| | ||||||||||||||||| ||||||    
T  36633749 tttgtaacacaattcttaagttaatggcgtaacgccacttccggcacatctattaaatcatttggataaaacttagtcatcctcaataatttgttcacat 36633650  T
Q  374 caaaagctgcaaattactttg 394  Q
    ||||| | |||||| ||||||    
T  36633649 caaaaaccgcaaatgactttg 36633629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 221 - 392
Target Start/End: Complemental strand, 17076431 - 17076261
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    |||||||||  | |||| |||||||||| || |||||||||||||||| ||||||  || ||||||||  ||||||   ||| ||| | || || | ||     
T  17076431 cacaaagatccgaaagccctttcaacttagcgaattttggatcagatttaacattcctaacataattctgaagttgtctgtgcaactctacatcagaca- 17076333  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactt 392  Q
    || || ||||||||||||||||| ||||  |||||||||||||||| ||||||||||||| |||||| ||||    
T  17076332 atctacaaaattatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagcaaatgactt 17076261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 481
Target Start/End: Original strand, 25819371 - 25819636
Alignment:
Q  221 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttctggcac 320  Q
    ||||||||||||||  | |||| ||||| ||||||||||||||||||| |||||||  | ||| |||  ||||||||||  |||||| || |||   ||     
T  25819371 cacaaagatttggattcccttttaacttagcaaattttggatcagatttaacatttacaacattatttctaagttgatgacgtaacgtcagttccaacat 25819470  T
Q  321 atttataaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaattactttgagagact----cattaaacacattat 416  Q
    || || ||||  |||||||| ||| ||| ||||||||||||||||  |||||| |||| ||| |||| | |||| | || |    ||| ||||||||| |    
T  25819471 atctacaaaaccatttggat-aaattcagtcatcctcaataatttattcacataaaaaactggaaataattttgcgggagtcaaacataaaacacattgt 25819569  T
Q  417 aagagttttagaaggttgttgatttg--ttcttattttcaacatattgtgctttatttatataaaaa 481  Q
    ||||||| || ||| ||||||| |||  |||||||||| |||||||| || |||||| |||| ||||    
T  25819570 aagagttctaaaagtttgttgacttgttttcttatttttaacatattatgttttattcatattaaaa 25819636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 30078064 - 30077995
Alignment:
Q  294 ttgatggtgtaacgccacttctggcacatttataaaattatttggataaaactcaatcatcctcaataatt 364  Q
    |||||||||||||||| |||| | ||||| ||||||||||||||||||||||||| |||| ||||||||||    
T  30078064 ttgatggtgtaacgccgcttcag-cacatctataaaattatttggataaaactcagtcattctcaataatt 30077995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 25767341 - 25767402
Alignment:
Q  326 taaaattatttggataaaactcaatcatcctcaataatttggtcacatcaaaagctgcaaat 387  Q
    |||||| |||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  25767341 taaaatcatttggattaaactcagtcatcctcaataatttgttcacatcaaaaactgcaaat 25767402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 5569180 - 5569242
Alignment:
Q  158 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 220  Q
    |||||||||||||||||||| | ||| |||||  ||||||||||||||||| |||||| ||||    
T  5569180 caagagcaaagtcaacttcaaaagctaataaatcataacaaatgtgttgcacttatttatttc 5569242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 9895 - 9956
Alignment:
Q  159 aagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 220  Q
    ||||||||||||||||||| |  |||||||| |||||||||||||||||| |||||||||||    
T  9895 aagagcaaagtcaacttcaaaatcttataaaatataacaaatgtgttgcacttatttgtttc 9956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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