View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7191_low_8 (Length: 420)
Name: NF7191_low_8
Description: NF7191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7191_low_8 |
 | |
|
| [»] scaffold0037 (1 HSPs) |
| | |
|
| [»] scaffold0021 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0037 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 6 - 410
Target Start/End: Original strand, 36341 - 36745
Alignment:
| Q |
6 |
aataaaatgaaagatggaatctgagaaacaagttaatgaagatgtgacacatatgatcagcatacttggacaaattcaatattctcaaaagttggtcact |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36341 |
aataaaatgaaagatggaatttgagaaacaagttaatgaagatgtgacacatatgatcagcatacttggacaaattcaatattctcaaaagttggtcact |
36440 |
T |
|
| Q |
106 |
gatgatatatagaaaaaacctttgatattttgattcactatcattgattatggttcactatctattagattttttagggaaattggcgattcaattcttc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36441 |
gatgatatatagaaaaaacctttgatattttgattcactatcattgattatggttcactatctattagattttttagggaaattggcgattcaattcttc |
36540 |
T |
|
| Q |
206 |
atgaatgtacattttgtttaaattaactgacatgtcaatcggagtccgtgttgtgtttgacgtctgtgtcgatgtttcttcaaacacttgtataaaaaat |
305 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36541 |
atgaatgtacattttgtttacattaactgacatgtcaattggagtccgtgttgtgtttgacgtctgtgtcgatgtttcttcaaacacttgtataaaaaat |
36640 |
T |
|
| Q |
306 |
gaaaagttgaaatgatcttacaataacaaaatcttctaaataatttcttctctacataagttgagatcagtttaatcatctcacattttttcttcatatt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36641 |
gaaaagttgaaatgatcttacaataacaaaatcttctaaataatttcttctctacataagttgagatcagtttaatcatctcactttttttcttcatatt |
36740 |
T |
|
| Q |
406 |
gatgt |
410 |
Q |
| |
|
||||| |
|
|
| T |
36741 |
gatgt |
36745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 405
Target Start/End: Original strand, 10430891 - 10431294
Alignment:
| Q |
6 |
aataaaatgaaagatggaatctgagaaacaagttaatgaagatgtgacacatatgatcagcatacttggacaaattcaatattctcaaaagttggtcact |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10430891 |
aataaaatgaaagatggaatttgagaaacaagttaatgaagatgtgacacatatgatcagcatacttggacaaattcaatattctcaaaagttggtcagc |
10430990 |
T |
|
| Q |
106 |
gatgatatatagaaaaaacctttgatattttgattcactatcattgattatggttcactatctattagattttttagggaaattggcgattcaattcttc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10430991 |
gatgatatatagaaaaaacctttgatattt-gattcactatcattgattatggttcactaactattagattttt-agggaaattggcgattcaattcttc |
10431088 |
T |
|
| Q |
206 |
atgaatg----tacattttgtttaaattaactgacatgtcaa--tcggagtccgtgttgtgtttgacgtctgtgtcgatgtttcttcaaacacttgtata |
299 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||| ||||| | ||||||||||||| ||||||||||| |||||||||||||||||||| | |
|
|
| T |
10431089 |
ttgaattaatatatattttgtttacattaactgacatgtcaaaatcggaattcgtgttgtgtttggcgtctgtgtcggtgtttcttcaaacacttgtaaa |
10431188 |
T |
|
| Q |
300 |
aaaaatgaaaagttgaaatgatcttacaataacaaaatcttctaaataatttcttctctacataagttgagatcagtttaatcatctcacattttttctt |
399 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| || |||||| |
|
|
| T |
10431189 |
aaaaataaaaagttaaaatgatcttacaataacaaaatcttctaaataatttcttccttacatgagttgaaatcagtttaatcatctcactttgtttctt |
10431288 |
T |
|
| Q |
400 |
catatt |
405 |
Q |
| |
|
|||||| |
|
|
| T |
10431289 |
catatt |
10431294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 11601299 - 11601209
Alignment:
| Q |
283 |
cttcaaacacttgtataaaaa-atgaaaagttgaaatgatcttacaataacaaaatcttctaaataatttcttctctacataagttgagat |
372 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11601299 |
cttcaaacacttgtaaaaaaacaagaaaagttgaaatgatcttacaatgacaaagtcttctaaataatttcttctttacataagttgagat |
11601209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 112579 - 112455
Alignment:
| Q |
6 |
aataaaatgaaagatggaatctgagaaacaagttaatgaagatgtgacacatatgatcagcatacttggacaaattcaatattctcaaaagttggtcact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
112579 |
aataaaatgaaagatggaatctgagaaacaagttaatgaagatgtgacacatatgatgagcatacttggacaaattcaa-att-tcaaaatatggtcact |
112482 |
T |
|
| Q |
106 |
gatgata-tatagaaaaaacctttgat |
131 |
Q |
| |
|
||| ||| ||||||| ||||||||||| |
|
|
| T |
112481 |
gataatattatagaacaaacctttgat |
112455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 103525 - 103570
Alignment:
| Q |
6 |
aataaaatgaaagatggaatctgagaaacaagttaatgaagatgtg |
51 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
103525 |
aataaaatgaaagatggaatctgagaatcaagttaatgaagatgtg |
103570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University