View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_high_10 (Length: 378)
Name: NF7192_high_10
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 46986 - 47345
Alignment:
| Q |
1 |
agatccgcgattgtgaagaacagaaccacacttggttgtttactttgggaaccacacttggttcccaaatagaatacactagatattagataactatgaa |
100 |
Q |
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| T |
46986 |
agatccgccactgtgaagaagagaaccacacttggttgtttactttgggaaccacacttggttcccaaatagaatacactagatattagataactatgaa |
47085 |
T |
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| Q |
101 |
tattgatcgtgactttgaagagtagtttactaagtaatagtatgattacaaattaaatctcattgaaacctcaattgagatggtctcttcttgaaataga |
200 |
Q |
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| T |
47086 |
tattgatcgtgactttgaagagtagtttactaagtaatagtatgattacaaattaaatctcattgaaacctcaattgagatggtctcttcttgaaataga |
47185 |
T |
|
| Q |
201 |
atgatactataagagtttgtattgttctgaggagtctatctgatcaagacgtgtcttcaaatatggaagattgaaaacaaaattggaagccaatggtaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186 |
atgatactataagagtttgtattgttctgaggagtctatctgatcaagacgtgtcttcaaatatggaagattgaaaacaaaattggaagccaatggtaca |
47285 |
T |
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| Q |
301 |
gttgaacattgtgcttctgtattttcacattcacctattacacactctgcagttgatttt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47286 |
gttgaacattgtgcttctgtattttcacattcacctattacacactctgcagttgatttt |
47345 |
T |
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