View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_high_16 (Length: 263)
Name: NF7192_high_16
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 41152255 - 41152314
Alignment:
| Q |
20 |
accatcgatcatctccactttgtaatcagtcatcaacctgattcacaacaacccaattac |
79 |
Q |
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| T |
41152255 |
accattgatcatctccactttgtaatcagtcatcaacctgattcacaacaacccaattac |
41152314 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 41152394 - 41152429
Alignment:
| Q |
159 |
gttacagacagcttcgtcaagttcatgtctcttctc |
194 |
Q |
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| T |
41152394 |
gttacagacagcttcgtcaagttcatgtctcttctc |
41152429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 41167501 - 41167551
Alignment:
| Q |
26 |
gatcatctccactttgtaatcagtcatcaacctgattcacaacaacccaat |
76 |
Q |
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| T |
41167501 |
gatcatctcgactttgtgatcaatcatcatcctgattcacagcaacccaat |
41167551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 32638840 - 32638893
Alignment:
| Q |
26 |
gatcatctccactttgtaatcagtcatcaacctgattcacaacaacccaattac |
79 |
Q |
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| T |
32638840 |
gatcatcttcaccttgtaatcactcatcatcctgcttcataacaacccaattac |
32638893 |
T |
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