View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7192_high_2 (Length: 683)

Name: NF7192_high_2
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7192_high_2
NF7192_high_2
[»] chr4 (6 HSPs)
chr4 (129-418)||(19910065-19910356)
chr4 (161-490)||(1661204-1661534)
chr4 (40-116)||(19910343-19910419)
chr4 (513-575)||(19909623-19909687)
chr4 (637-677)||(19909527-19909567)
chr4 (161-209)||(55877810-55877858)
[»] chr8 (2 HSPs)
chr8 (40-511)||(19963630-19964099)
chr8 (514-571)||(19964390-19964447)
[»] chr3 (1 HSPs)
chr3 (130-460)||(25490145-25490472)
[»] scaffold0405 (1 HSPs)
scaffold0405 (218-351)||(13194-13326)
[»] chr1 (1 HSPs)
chr1 (315-370)||(7881508-7881563)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 129 - 418
Target Start/End: Complemental strand, 19910356 - 19910065
Alignment:
Q  129 ctacaagtcattcactttgatgaatgctattttttgcattc-taattgtttgataaaaggatcactagaacttagttgaggtcttctcggtgcatttctt 227  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  19910356 ctacaagtcattcactttgatgaatgctattttttgcatttataattgtatgataaaaggatcacgagaacttagttgaggtcttctctatgcatttctt 19910257  T
Q  228 aaatcaaagacatggaatagataataggtctcattatatctgaaatttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaa 327  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19910256 aaatcaa-gacatggaatagataataggtctcattatacctgagatttaaaacttattgttttttcttctccaatttttgaatttgagaatgaagatgaa 19910158  T
Q  328 ccattgaagggttccttggcaaaataaagaccttatttaaagg--nnnnnnnnccttttatttgtggattggccgggtaagtttataaatttt 418  Q
    |||||||||| || ||||||||||||||| |||||||||||||          ||||||||||||||| ||||||||||||||||||||||||    
T  19910157 ccattgaaggatttcttggcaaaataaaggccttatttaaaggttttttttgtccttttatttgtggactggccgggtaagtttataaatttt 19910065  T

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Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 161 - 490
Target Start/End: Complemental strand, 1661534 - 1661204
Alignment:
Q  161 tttgcattctaattgtttgataaaaggatcactagaacttagttgaggtcttctcggtgcatttcttaaatcaaagacatggaatagataataggtctca 260  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||    
T  1661534 tttgcattctaactgtttgataaaaggatcattaaaacttagttgaggtcttctcagtgcatttcttaaatcaa-gacatggaatagataatagctccca 1661436  T
Q  261 ttatatctgaaatttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaaccattgaagggttccttggcaaaataaagacct 360  Q
    ||||  ||| |||||||||||||||||||||||| |||| |||||||||||| ||||| | | || ||||||  ||| |||||||||||||||||| |||    
T  1661435 ttatgcctgtaatttaaaacttattgttttttctcctcccatttttgaatttaacaattatggtgtaccattacaggcttccttggcaaaataaaggcct 1661336  T
Q  361 tatttaaagg---nnnnnnnnccttttatttgtggattggccgggtaagtttataaattttccatattttttctggctgcattgataaatttagttggga 457  Q
    ||||| ||||            |||||||||||||| ||| || |||||||| |||||||||||| ||||||| | || |||||||| ||| || || |     
T  1661335 tatttgaaggttttcttttgtgcttttatttgtggactggtcgagtaagtttttaaattttccat-ttttttcggactacattgatagattgagctgagc 1661237  T
Q  458 tgtagatatggtagttgagcatggatgagtcta 490  Q
    |||||||| ||| ||||||||||| ||||||||    
T  1661236 tgtagatagggtggttgagcatggttgagtcta 1661204  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 19910419 - 19910343
Alignment:
Q  40 gagagatttcaaaactggagaaatggaaatgcaatgctttggcagtacccaatttagtatcatctacaagtcattca 116  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  19910419 gagagatttcaaaacgggagaaatggaaatgcaatgttttggcagtgtccaatttagtatcatctacaagtcattca 19910343  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 513 - 575
Target Start/End: Complemental strand, 19909687 - 19909623
Alignment:
Q  513 tatgagtgttcttattgta--gtccttgaatgtatcagtattgcaaattcatacccaagtgtctc 575  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  19909687 tatgagtgttcttattatatagtccttgaatgtatcggtattgcaaattcatacccaagtgtctc 19909623  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 637 - 677
Target Start/End: Complemental strand, 19909567 - 19909527
Alignment:
Q  637 ccattctttgcattcattcgtcttcttgatcttcttctcac 677  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  19909567 ccattctttgcgttcattcgtctttttgatcttcttttcac 19909527  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 55877810 - 55877858
Alignment:
Q  161 tttgcattctaattgtttgataaaaggatcactagaacttagttgaggt 209  Q
    |||||||||||| ||| ||||||||||||| || ||| |||||||||||    
T  55877810 tttgcattctaagtgtatgataaaaggatcgcttgaatttagttgaggt 55877858  T

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Target: chr8 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 40 - 511
Target Start/End: Original strand, 19963630 - 19964099
Alignment:
Q  40 gagagatttcaaaactggagaaatggaaatgcaatgctttggcagtacccaatttagtatcatctacaagtcattcannnnnnnnattactacaagtcat 139  Q
    |||| |||||||||| |||||||| | ||||  ||||||||||||| |||||||||||||||| || | ||||||||        | |||||||||||||    
T  19963630 gagatatttcaaaacaggagaaataggaatgtgatgctttggcagtgcccaatttagtatcatttata-gtcattcacttttgttagtactacaagtcat 19963728  T
Q  140 tcactttgatgaatgctattttttgcattctaattgtttgataaaaggatcactagaacttagttgaggtcttctcggtgcatttcttaaatcaaagaca 239  Q
    |||||| ||||||||||| |||  ||||| ||| ||||||| |||||||||| ||||||||||| |||||||||||  ||||||||||||||||| || |    
T  19963729 tcacttcgatgaatgctacttt--gcattttaactgtttgacaaaaggatcattagaacttagtcgaggtcttctctttgcatttcttaaatcaa-gata 19963825  T
Q  240 tggaatagataataggtctcattatatctgaaatttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaaccattgaagggt 339  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | || ||||||| || ||    
T  19963826 tggaatagataatagctctcattatgcctgaaatttaaaacttattgttttttctcctccaatttttgaatttaacaatgacggtgtaccattgcagagt 19963925  T
Q  340 tccttggcaaaataaagaccttatttaaag---gnnnnnnnnccttttatttgtggattggccgggtaagtttataaattttccatattttttctggctg 436  Q
    ||||||||||||||||| |||||||| |||            ||||||||||||||| | |||||||||||||||||||||| ||| |||||||||| ||    
T  19963926 tccttggcaaaataaaggccttatttgaagattttcttttgtccttttatttgtggactcgccgggtaagtttataaatttttcat-ttttttctggttg 19964024  T
Q  437 cattgataaatttagttgggatgtagatatggtagttgagcatggatgagtctacgattcttaatgccatgttat 511  Q
    |||||||| ||| || || | | |||||| |||  |||||||||| |||||  | |||| |||||||||||||||    
T  19964025 cattgatagattgagctgagctatagatagggtgattgagcatggttgagtacatgattgttaatgccatgttat 19964099  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 514 - 571
Target Start/End: Original strand, 19964390 - 19964447
Alignment:
Q  514 atgagtgttcttattgtagtccttgaatgtatcagtattgcaaattcatacccaagtg 571  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  19964390 atgagtgttcttattatagtcattgaatgtatcaatattgcaaattcatacccaagtg 19964447  T

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Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 130 - 460
Target Start/End: Original strand, 25490145 - 25490472
Alignment:
Q  130 tacaagtcattcactttgatgaatgctattttttgcattctaattgtttgataaaaggatcactagaacttagttgaggtcttctcggtgcatttcttaa 229  Q
    ||||||||||||||||||||||| |||| |||  ||||| |||  ||||||||||||||||||||||||| |||||||||||||||  |||| || ||||    
T  25490145 tacaagtcattcactttgatgaaagctacttt--gcattataaccgtttgataaaaggatcactagaactaagttgaggtcttctctatgcaatt-ttaa 25490241  T
Q  230 atcaaagacatggaatagataataggtctcattatatctgaaatttaaaacttattgttttttcttctccaatttttgaatttgacaatgaagatgaacc 329  Q
    ||||| |||||| ||||| |||| | |||||||||   | | ||||||||||||  ||||||||||||| ||||||| ||||||||||||| |||| |||    
T  25490242 atcaa-gacatgaaataggtaatggctctcattatgctttagatttaaaacttacggttttttcttctcgaatttttaaatttgacaatgaggatgtacc 25490340  T
Q  330 attgaagggttccttggcaaaataaagaccttatttaaaggnnnnnnnnccttttatttgtggattggccgggtaagtttataaattttcca--tatttt 427  Q
    |||   ||||||||||| |||||||||  ||||||| || |        | |||||||| ||||||||  ||||||||| | ||||||||||  |  |||    
T  25490341 attagcgggttccttggaaaaataaaggtcttatttgaa-gttttttgtcgttttatttatggattggttgggtaagttcacaaattttccagtttcttt 25490439  T
Q  428 ttctggctgcattgataaatttagttgggatgt 460  Q
    || |||||||||||||| ||| |||||| ||||    
T  25490440 ttgtggctgcattgatagattgagttggcatgt 25490472  T

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Target: scaffold0405 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 13326 - 13194
Alignment:
Q  218 tgcatttcttaaatcaaagacatggaatagataataggtctcattatatctgaaatttaaaacttattgttttttcttctccaatttttgaatttgacaa 317  Q
    ||||||| ||||||| | ||||||||| || ||||| |||  |||||   |||||||||||||| |  ||| ||||||||||||||| ||||| ||||||    
T  13326 tgcatttattaaatcta-gacatggaagaggtaataagtcctattatgcatgaaatttaaaactcaaggttgtttcttctccaatttctgaatctgacaa 13228  T
Q  318 tgaagatgaaccattgaagggttccttggcaaaa 351  Q
    ||| || |  || ||| |||||||||||||||||    
T  13227 tgaggaagttcctttgcagggttccttggcaaaa 13194  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 7881563 - 7881508
Alignment:
Q  315 caatgaagatgaaccattgaagggttccttggcaaaataaagaccttatttaaagg 370  Q
    |||||| |||| ||||||| |||||||||||||||||||||| |||||||| ||||    
T  7881563 caatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttgaagg 7881508  T

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