View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_low_1 (Length: 714)
Name: NF7192_low_1
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 39613447 - 39613217
Alignment:
| Q |
20 |
aacagaatatactccttcaaactttt--gtgtttttattgaacatttgatattagctaaagcatattccacacatatctagtatctgggcttcttatccc |
117 |
Q |
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| T |
39613447 |
aacagaatatactccttcaaacttttatgtgtttttattgaacatttgatattagctaaagcatattccacacatatctagtatctgggcttcttatccc |
39613348 |
T |
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| Q |
118 |
aaacccaactagcatttctacattaaataattgcaataagattacaaaaaacctaaaattccacatataaataattacatagacattcctaacaggaaga |
217 |
Q |
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| T |
39613347 |
aaacccaactagcatttctacattaaataattgcaataagattacaaaaaacataaaattccacatataaataattacatagacattcttaacaggaaga |
39613248 |
T |
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| Q |
218 |
aaaacaaaaatgaaatcaggaatgctttatc |
248 |
Q |
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| T |
39613247 |
aaaacaaaaatgaaatcaggaatgctttatc |
39613217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 530 - 700
Target Start/End: Complemental strand, 39612964 - 39612794
Alignment:
| Q |
530 |
cttctttttcgatgcttgtgatggttgtcatcaccacaagaaaatatgatgatggataaaactgaaagagacagaaagataattcccaataaatataaaa |
629 |
Q |
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| T |
39612964 |
cttctttttcgatgcttgtgatggttgtcatcaccacaagaaaatatgatgatggataaaactgaaagagacagaaagataattcccaataaatataaaa |
39612865 |
T |
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| Q |
630 |
ttcctgaattataatctccttggccaccaccaagtatagcatgaaattctctagccattactcagaataat |
700 |
Q |
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| T |
39612864 |
ttcctgaattataatctccctggccaccaccaagtatagcatgaaattctctagccattactcagaataat |
39612794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 319 - 436
Target Start/End: Complemental strand, 39613175 - 39613058
Alignment:
| Q |
319 |
ctaacatgtcaagaatttcaattacatcagaaattaaagaactctatgaactaatttaattttcatttatacatgttcataccaatgtatatttgtgtac |
418 |
Q |
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| T |
39613175 |
ctaacatgtcaagaatttcaattacctcagaaattaaagaactctatgaactaatttaattttcatttatacatgttcataccaatgtatatttgtgtac |
39613076 |
T |
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| Q |
419 |
aaaagataattgatctag |
436 |
Q |
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| T |
39613075 |
aaaagataattgatctag |
39613058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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