View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7192_low_12 (Length: 364)

Name: NF7192_low_12
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7192_low_12
NF7192_low_12
[»] chr8 (3 HSPs)
chr8 (23-347)||(2423384-2423696)
chr8 (233-288)||(17019108-17019163)
chr8 (233-288)||(17549545-17549600)
[»] chr4 (2 HSPs)
chr4 (232-287)||(3673628-3673683)
chr4 (233-287)||(34115707-34115761)
[»] chr2 (1 HSPs)
chr2 (232-287)||(3398033-3398088)
[»] chr7 (1 HSPs)
chr7 (233-287)||(23732448-23732502)
[»] chr1 (1 HSPs)
chr1 (242-287)||(13691822-13691867)
[»] chr5 (1 HSPs)
chr5 (232-284)||(40565209-40565261)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 347
Target Start/End: Original strand, 2423384 - 2423696
Alignment:
Q  23 aagttgacatgaatggtgggaaggatttcgatttaagatagtaattgtgtgatgtgatgtagtttttgataggttcaacctcaaatcaatgataaaaatc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2423384 aagttgacatgaatggtgggaaggatttcgatttaagatagtaattgtgtgatgtgatgtagtttttgataggttcaacctcaaatcaatgataaaaatc 2423483  T
Q  123 atttgaaaataattcaaggtctacacttttatgaaacaacattaacttttgatgtcatacaatgacttgatgatgtcatctaatgacttgaatggtcata 222  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2423484 atttgaaaataattcaaggtttacacttttatgaaacaacattaacttttgatgtcatacaatgacttgatgatgtcatctaatgacttgaatggtcata 2423583  T
Q  223 c-aatcactcaaataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattgatatttatatattcttttcctacaacaagtccata 321  Q
    | |||||||||||||||||||||||||||||||||||             ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2423584 caaatcactcaaataaaatggaaggagaaaaacaatc-------------ttgggtcaaaagttgatatttatatattcttttcctacaacaagtccata 2423670  T
Q  322 aatcttgcatccaatccattcccaca 347  Q
    ||||||||||||||||||||||||||    
T  2423671 aatcttgcatccaatccattcccaca 2423696  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 17019163 - 17019108
Alignment:
Q  233 aataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattgat 288  Q
    ||||||| |||| |||||||||||| ||||   |||||||||||||||||||||||    
T  17019163 aataaaagggaaagagaaaaacaatttagaagggtgattttgggtcaaaaattgat 17019108  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 17549600 - 17549545
Alignment:
Q  233 aataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattgat 288  Q
    ||||||| |||| |||||||||||| ||||   |||||||||||||||||||||||    
T  17549600 aataaaagggaaagagaaaaacaatttagaagggtgattttgggtcaaaaattgat 17549545  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 3673683 - 3673628
Alignment:
Q  232 aaataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga 287  Q
    |||||||| |||||||||||||| || |||||  ||||||| ||||||||||||||    
T  3673683 aaataaaaaggaaggagaaaaacgatttagaggggtgatttggggtcaaaaattga 3673628  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 34115707 - 34115761
Alignment:
Q  233 aataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga 287  Q
    ||||||| |||| ||||||||| | ||||||  ||||||||||||||||||||||    
T  34115707 aataaaagggaaagagaaaaacgaactagaggggtgattttgggtcaaaaattga 34115761  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 3398033 - 3398088
Alignment:
Q  232 aaataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga 287  Q
    |||||||| ||||||||||||||||| |||||  ||||| | ||||||||||||||    
T  3398033 aaataaaagggaaggagaaaaacaatgtagaggggtgatctggggtcaaaaattga 3398088  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 23732448 - 23732502
Alignment:
Q  233 aataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga 287  Q
    |||||||| ||| ||||||||| |  |||||||||||||||| ||||||||||||    
T  23732448 aataaaatagaaagagaaaaacgagttagagaagtgattttgagtcaaaaattga 23732502  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 13691822 - 13691867
Alignment:
Q  242 gaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga 287  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||    
T  13691822 gaaggagaaaaacgatttagaggggtgattttgggtcaaaaattga 13691867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 40565209 - 40565261
Alignment:
Q  232 aaataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaat 284  Q
    ||||| || |||||||||||||| || |||||| ||||||| |||||||||||    
T  40565209 aaatagaaaggaaggagaaaaacgatttagagaggtgatttggggtcaaaaat 40565261  T

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