View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_low_13 (Length: 335)
Name: NF7192_low_13
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 40144860 - 40144625
Alignment:
| Q |
8 |
ttggtgttaatggcatctttattgcaacaaaatcatttgatgatgatgaacaagattcttctgatgacttgcagggtatttccatcaaaagattttcctt |
107 |
Q |
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| T |
40144860 |
ttggtgttaatggcatctttattgcaacaaaatcatttgatgatgatgaacaagattcttctgatgacttgcagggtatttccatcaaaagattttcctt |
40144761 |
T |
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| Q |
108 |
caacacataaatactataccttatgagaaaaatcataatttcataaattaagcaatgttttcttgcctattaattccttataatcatgattaattcaaca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
40144760 |
caacacataaatactataccttatgagaaaaatcataattttataaattaagcaatgttttcttgcctattaattccttataataatgaataattcaaca |
40144661 |
T |
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| Q |
208 |
tgttatcacagcaatataaataaatattgtaacatggcat |
247 |
Q |
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| T |
40144660 |
tgttatcacagcaatata----aatattgtaacatggcat |
40144625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 40144599 - 40144554
Alignment:
| Q |
272 |
taccttgtgaactggaagagaaagtgttcttttacaagaagaaagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40144599 |
taccttgtgaactggaagagaaagtgttcttttacaagaagaaagt |
40144554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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