View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_low_4 (Length: 476)
Name: NF7192_low_4
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 22 - 460
Target Start/End: Original strand, 21483728 - 21484166
Alignment:
| Q |
22 |
ctgacacggatcttgaaaatgttgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttgtgaagatga |
121 |
Q |
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| T |
21483728 |
ctgacacggatcttgaaaatgatgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttatgaagatga |
21483827 |
T |
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| Q |
122 |
ctagtttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcgatcgtcgatttcttaa |
221 |
Q |
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| T |
21483828 |
ctagtttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcaatcgttgatttcttaa |
21483927 |
T |
|
| Q |
222 |
gcttcacattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcacatgc |
321 |
Q |
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| T |
21483928 |
gcttcacattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcacatgc |
21484027 |
T |
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| Q |
322 |
acctaattcatctccttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttattctcctcgatattcacttgttgcggtttattt |
421 |
Q |
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| T |
21484028 |
acctaattcatctccttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttattctcctcgatattcacttgttgcggtttattt |
21484127 |
T |
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| Q |
422 |
tcccgatcatcatgcactatcatcggaacttgttgatgt |
460 |
Q |
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| T |
21484128 |
tcccgatcatcatgcactatcatcggaacttgttgatgt |
21484166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 26551516 - 26551593
Alignment:
| Q |
383 |
tcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgatgt |
460 |
Q |
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|||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| | || |||||||||| |
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| T |
26551516 |
tcgttattttcctcaatattcacttgttgtggtttattttccctttcatcatgcactatcattgaaatttgttgatgt |
26551593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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