View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_low_5 (Length: 476)
Name: NF7192_low_5
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 30017635 - 30018081
Alignment:
| Q |
10 |
gtgttaaaattggtagatgtaggaactataatgttcaaaattcacctattttatccttattttcttgtagcctaaatgcaataaataagttgctatggta |
109 |
Q |
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| T |
30017635 |
gtgttaaaattggtagatgtaggaactataat---caaaattcacctattttatccttattttcttatagccttaatgcaataaata-gttgtcatggta |
30017730 |
T |
|
| Q |
110 |
gttgtgatgttgatagtgtaatgtaattggcttccccttttttagtttgatatagtcagtgcttgaatagatatttatcatttatgatgttcaccaaact |
209 |
Q |
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| T |
30017731 |
gttgtgatgttgatagtgtaatgtaattggcttccccttttttagtttgatatagtcagtgtttgaatagatatttatcgtttatgatgttcaccaaact |
30017830 |
T |
|
| Q |
210 |
atatagtagtattgtttggagtccaaagtagcagttttagtcatttttctagcaagttcaaccaatcaaattagctatcagtttaaacacactcgttgaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30017831 |
atatagtagtattgtttggagtccaaagtagcagttttagtaatttttctagcaagttcaaccaatcaaattagctatcagtttaaacacacttgttgaa |
30017930 |
T |
|
| Q |
310 |
ttactagtcatgtaactcatgttttctttattacttgactgcttaataactttaccatattatgctaaattttcatggtataaggtatcaaaatcggtgg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30017931 |
ttactagtcatgtaactcatgttttctttattacttgactgcttaataactttaccatattatgctaaattttcatggtataaggtatcaaaatcggtgg |
30018030 |
T |
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| Q |
410 |
tctaatatgcactacccaccataccattatttaaggttacgtatataatta |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30018031 |
tctaatatgcactacccaccataccattatttaaggttacgtatataatta |
30018081 |
T |
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