View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7192_low_6 (Length: 475)
Name: NF7192_low_6
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_low_6 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 40634705 - 40635180
Alignment:
| Q |
1 |
aaattcttgtataaatgtcggataccacaaattatgcgtactaagtcaaacaaagctaaatgattcataagtcttttgtgcctaaatatttatttattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40634705 |
aaattcttgtataaatgtcggataccacaaattatgcgtactaagtcaaacaaagctaaatgattcataagtcttttgtgcctaaatatttatttattca |
40634804 |
T |
|
| Q |
101 |
aa-tgatcatatatcagttgttaattcgcttagaagaatatcttgatcttcaaatggctgtgttttgaattgtgtaggcattacatgcaagttgggagcc |
199 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40634805 |
aaatgatcatatatcaattgttaattcgcttagaagaatatcttgatcttcaaatggctgtgttttgaattgtgtaggcattacatgcaagttgggagcc |
40634904 |
T |
|
| Q |
200 |
aaggcattctaggtactgtcacaaatttccatcgcaacagtatgtaaaagttggaactgttcttcgccaattcgggtatacagtggtagctctacatggc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40634905 |
aaggcattctaggtactgtcacaaatttccatcgcaacagtatgtaaaagttggaactgttcttcgccaattcgggtatacagtggtagctctacatggc |
40635004 |
T |
|
| Q |
300 |
tgtttgagaacagaaattcaggtagggtaacatctgagttcttaacataattttgaccattttgtgaatctgtacctgatcacggtttagcatctcattt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
40635005 |
tgtttgagaacagaaattcaggtagggtaacatctgagttcttaacataattttgaccattttgtgaatctgtacctgatcacagtttagcatttcattt |
40635104 |
T |
|
| Q |
400 |
gataaatgacagtgatacctttatattctttgatggaattaccactttgactagtccaaatagtagttatatttat |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40635105 |
gataaatgacagtgatacctttatattctttgatggaattaccactttgactagtccaaatagtagttatatttat |
40635180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 160 - 355
Target Start/End: Original strand, 40646698 - 40646892
Alignment:
| Q |
160 |
tgttttgaattgtgtaggcattacatgcaagttgggagccaaggcattctaggtactgtcacaaatttccatcgcaacagtatgtaaaagttggaactgt |
259 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40646698 |
tgttttgaactgtgcaggcattacatggaagttgggagccaaggcattttaggtactgtcacaaatttccatgtcaacagtatgtaaaagttggaactgt |
40646797 |
T |
|
| Q |
260 |
tcttcgccaattcgggtatacagtggtagctctacatggctgtttgagaacagaaattcaggtagggtaacatctgagttcttaacataattttga |
355 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||| ||||| |
|
|
| T |
40646798 |
tcttcgtcaattcgggtatacagtggtagctctacatggttgtttgagaacagaaattcaggta-cataatatttgagttcttaacataaatttga |
40646892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 161 - 323
Target Start/End: Complemental strand, 4781005 - 4780843
Alignment:
| Q |
161 |
gttttgaattgtgtaggcattacatgcaagttgggagccaaggcattctaggtactgtcacaaatttccatcgcaacagtatgtaaaagttggaactgtt |
260 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||| |
|
|
| T |
4781005 |
gttttgaattggccaggcgttgcatgcaagttgggagccaaggcattctaggtactgtcacaaatttccatggcagcaatatgtaaaagttggagctgtt |
4780906 |
T |
|
| Q |
261 |
cttcgccaattcgggtatacagtggtagctctacatggctgtttgagaacagaaattcaggta |
323 |
Q |
| |
|
||||| ||||| || || || ||||||||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
4780905 |
cttcgtcaatttggctacaccgtggtagctctgcatggctgtttgagatccgaaattcaggta |
4780843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University