View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_low_7 (Length: 440)
Name: NF7192_low_7
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 43579486 - 43579062
Alignment:
| Q |
1 |
tatcatctataaacaactaaagacagaggcttgaaagcatagccactacacaaaggccgtctacaagttaacagaagagtccatcaccaaattcagtttt |
100 |
Q |
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| T |
43579486 |
tatcatctataaacaactaaagacagaggcttgaaagcatagccactacacaaaggcagtctacaagttaacagaagagtccatcaccaaattcagtttt |
43579387 |
T |
|
| Q |
101 |
taagtaagcaa-cataatttatggacaaagcagtgaagactgttctacctgaaaatgattgaagtttgccttaggttgtttttcatgagccaatttagac |
199 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43579386 |
taagtaagtaaacataatttatggacaaagcagtgaagactgttctacctgaaaatgattgaagtttgccttaggttgtttttcatgagccaatttagac |
43579287 |
T |
|
| Q |
200 |
aacgaggcagcaaagttttcagtctcttttggatcaatatcaatgctcacaagcttctcactgcatgaaagacacattccatcctcatctacattcgtct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43579286 |
aacgaggcagcaaagttttcagtctcttttggatcaatatcaatgctcacaagcttctcactgcatgaaagacacattccatcctcatctacattcgtct |
43579187 |
T |
|
| Q |
300 |
taacaaccttccattccccgcttccaagccacccttgaccatgccatccacctcctcccctcacaaacccttctcttatctcctcatcatcccactccct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43579186 |
taacaaccttccattccccgcttccaagccacccttgaccatgccatccaccacctcccctcacaaacccttctcttatctcctcatcatcccactccct |
43579087 |
T |
|
| Q |
400 |
cttcccaatcttcatcgcatattcc |
424 |
Q |
| |
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||||||||| ||||||||||||||| |
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| T |
43579086 |
cttcccaattttcatcgcatattcc |
43579062 |
T |
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