View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_low_8 (Length: 383)
Name: NF7192_low_8
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 13245934 - 13246065
Alignment:
| Q |
117 |
gccaactgaatttccaatttaaccaactcattcatcaccaattgtatcctttcatagtcttcattaagattatccatctgagccgagtcattcaacgtca |
216 |
Q |
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| T |
13245934 |
gccaactgaatttccaatttaaccaactcattcatcaccaattgtatcctttcatagtcttcattaagattatccatctgagccgagtcattcaacgtca |
13246033 |
T |
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| Q |
217 |
ctcgtttctcttcttcttcgccatattcaaca |
248 |
Q |
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| T |
13246034 |
ctcgtttctcttcttcttcgccatattcaaca |
13246065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 13246122 - 13246226
Alignment:
| Q |
260 |
gagttctctggcctttgcatatagaacggagatttcagtcaacaatctgtaatggtgcttcatcatgaattcactatcaacaaccagcgatttccacgac |
359 |
Q |
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| T |
13246122 |
gagttctctggcctttgcatatagaacggagatttcagtcaacaatctgttatcgtgcttcatcatgaattcaggatcaacaaccagcgatttctatgac |
13246221 |
T |
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| Q |
360 |
ttgca |
364 |
Q |
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||||| |
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| T |
13246222 |
ttgca |
13246226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 13245811 - 13245875
Alignment:
| Q |
45 |
gacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaattcttgc |
109 |
Q |
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| T |
13245811 |
gacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaatgcttgc |
13245875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 13245641 - 13245680
Alignment:
| Q |
5 |
tgacaatatgatgagttcttatttgaggccagcgtaaaac |
44 |
Q |
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| T |
13245641 |
tgacaatatgatgagttcttattcgaggccaacgtaaaac |
13245680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 7308977 - 7309073
Alignment:
| Q |
268 |
tggcctttgcatatagaacggagatttcagtcaacaatctgtaatggtgcttcatcatgaattcactatcaacaaccagcgatttccacgacttgca |
364 |
Q |
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| T |
7308977 |
tggcctttgcatatagaacggtcatttcagtgtacaatctgtcaaggtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgca |
7309073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 7308580 - 7308638
Alignment:
| Q |
45 |
gacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaat |
103 |
Q |
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| T |
7308580 |
gacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatcaat |
7308638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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