View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7192_low_9 (Length: 380)
Name: NF7192_low_9
Description: NF7192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7192_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 1482280 - 1481906
Alignment:
| Q |
1 |
taatgttgtatccgaggcaccacaccaaatttcccttccatatcacgaaacaattgaagcccttcttcaacaagccctgcgtgacaacaagccgacaaca |
100 |
Q |
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| T |
1482280 |
taatgttgtatccaaggcaccacaccaaatttcccttccatatcacgaaacaattgaagcccttcttcaacaagccctgcgtgacaacaagcagacaaca |
1482181 |
T |
|
| Q |
101 |
agctcgtaaaagttgtttcgttcggcttcacaccatcacttcccatctcatacaaaattttcaacgcctcttcccctctcccatgaattgctagtcccgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1482180 |
agctcgtaaaagttgtttcgttcggcttcacaccatcacttcccatctcatacaaaattttcaacgcctcttcccctctcccatgaattgccagtcccgt |
1482081 |
T |
|
| Q |
201 |
agtcatcgcagtccaagttaaaacattcctccatttcatccgccggaaaacagacaaagcactctcaagacacccgcatttcgagtacatatcaacaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1482080 |
agtcatcgcagtccaagttaaaacattcctccatttcatccgccggaaaacagacaaagcactctcaagacacccgcatttcgagtacatatcaacaagt |
1481981 |
T |
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| Q |
301 |
cctgtccctataaacacatcatcttcaaccttacacaacaccttcaccgcaaacccgtgtaagcaaacgccaatt |
375 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1481980 |
cccgtccctataaacacatcatcttcaaccttacacaacaccttcaccgcaaacccgtgtaagcaaacaccaatt |
1481906 |
T |
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