View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7193_low_2 (Length: 614)

Name: NF7193_low_2
Description: NF7193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7193_low_2
NF7193_low_2
[»] chr7 (3 HSPs)
chr7 (382-604)||(18233475-18233695)
chr7 (6-244)||(18233113-18233349)
chr7 (510-560)||(23930225-23930273)
[»] chr6 (3 HSPs)
chr6 (511-564)||(7569174-7569225)
chr6 (502-544)||(12235516-12235558)
chr6 (513-560)||(34446571-34446616)
[»] chr1 (6 HSPs)
chr1 (502-547)||(22794075-22794120)
chr1 (513-564)||(5944283-5944334)
chr1 (513-547)||(398773-398807)
chr1 (516-560)||(21145472-21145515)
chr1 (510-546)||(34741845-34741881)
chr1 (513-560)||(40747781-40747826)
[»] chr4 (6 HSPs)
chr4 (510-560)||(20743283-20743331)
chr4 (513-560)||(30520444-30520490)
chr4 (512-560)||(32910557-32910603)
chr4 (513-560)||(24343513-24343558)
chr4 (520-564)||(30298948-30298991)
chr4 (520-564)||(30327816-30327859)
[»] chr2 (2 HSPs)
chr2 (513-547)||(11308012-11308046)
chr2 (513-547)||(12668431-12668465)
[»] chr8 (1 HSPs)
chr8 (513-564)||(14692462-14692510)
[»] chr5 (3 HSPs)
chr5 (504-545)||(18586288-18586329)
chr5 (520-564)||(24906316-24906358)
chr5 (511-547)||(38749569-38749605)
[»] chr3 (2 HSPs)
chr3 (508-544)||(1830363-1830399)
chr3 (511-547)||(25948893-25948929)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 382 - 604
Target Start/End: Original strand, 18233475 - 18233695
Alignment:
Q  382 tccaatggtaagattcaagaacatattcctaaaaataggcaaattagtccacaaatgacactcaaaaaagtcaataatatatacatcaaccaaactaact 481  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18233475 tccaatagtaagattcaagaacatattcctaaaaataggcaaattagtccacaaatgacactcaaaaaagtcaataatatatacatcaaccaaactaact 18233574  T
Q  482 ataaacacttaaattatagctgtcggatacaacacctataattacactgaattatgtcattttttctcaaattactatctgtgcgtctatgtatcagtat 581  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||| |||||||||||    
T  18233575 ataaacacttaaattatagctgtcggatgcgacacctataattacactgaattatgtca--ttttctcaaattactatctgtgtgtctgtgtatcagtat 18233672  T
Q  582 cagtgtcatgtccggtgtctgtg 604  Q
    |||||||||||||||||||||||    
T  18233673 cagtgtcatgtccggtgtctgtg 18233695  T

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Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 18233113 - 18233349
Alignment:
Q  6 ataaaaatttaattaaatcgttgaatcaaacatccacctagtctactcatgaataaaagcgcctcaatcctgtctttgtgcgcatagctcagtttggtag 105  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||||| ||||  |||||  |||| |||| ||||||| | |||    
T  18233113 ataaaaatttaattaaatcgtttaatcaaatgtccacctagtctactcttgaataaaagcgccccaatattgtctcagtgcacatacctcagttag-tag 18233211  T
Q  106 ataaaatgcactgaaatatgtaggggtcagagatcgaacctcaaattccacttattcattctaagggtgaaattctaaacaccaaactacttgaccaaaa 205  Q
    ||| |||||| ||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  18233212 atacaatgcattgaaatatgtaggggtcagggatcgaacc-cagattccacttattcactctaagggtgaaattctaaacaccagactacttgaccaaaa 18233310  T
Q  206 ggtgagttctcttttctcaatcggtttttctccatccgc 244  Q
    ||||| |||||||||||||||||  ||||||||||||||    
T  18233311 ggtgaattctcttttctcaatcgacttttctccatccgc 18233349  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 560
Target Start/End: Complemental strand, 23930273 - 23930225
Alignment:
Q  510 acaacacctataattacactgaattatgtcattttttctcaaattactatc 560  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  23930273 acaacacctatgattacactgaattatgtca--ttttctcaaattactatc 23930225  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 564
Target Start/End: Original strand, 7569174 - 7569225
Alignment:
Q  511 caacacctataattacactgaattatgtcattttttctcaaattactatctgtg 564  Q
    |||||||||||||||||||||||||||| |  ||||||||||||| ||||||||    
T  7569174 caacacctataattacactgaattatgtaa--ttttctcaaattattatctgtg 7569225  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 544
Target Start/End: Original strand, 12235516 - 12235558
Alignment:
Q  502 tgtcggatacaacacctataattacactgaattatgtcatttt 544  Q
    ||||||| || |||||||| |||||||||||||||||||||||    
T  12235516 tgtcggacacgacacctatgattacactgaattatgtcatttt 12235558  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 560
Target Start/End: Complemental strand, 34446616 - 34446571
Alignment:
Q  513 acacctataattacactgaattatgtcattttttctcaaattactatc 560  Q
    |||||||| |||||||||||||||||||  ||||||||||||| ||||    
T  34446616 acacctatgattacactgaattatgtca--ttttctcaaattattatc 34446571  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 547
Target Start/End: Original strand, 22794075 - 22794120
Alignment:
Q  502 tgtcggatacaacacctataattacactgaattatgtcattttttc 547  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||    
T  22794075 tgtcggacacgacacctataattacactgtattatgtcattttttc 22794120  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 564
Target Start/End: Complemental strand, 5944334 - 5944283
Alignment:
Q  513 acacctataattacactgaattatgtcattttttctcaaattactatctgtg 564  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| || |||||    
T  5944334 acacttataattacactgaattatgtgattttttttcaaattattagctgtg 5944283  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 547
Target Start/End: Original strand, 398773 - 398807
Alignment:
Q  513 acacctataattacactgaattatgtcattttttc 547  Q
    |||||||||||||||||||||||||| ||||||||    
T  398773 acacctataattacactgaattatgtgattttttc 398807  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 560
Target Start/End: Complemental strand, 21145515 - 21145472
Alignment:
Q  516 cctataattacactgaattatgtcattttttctcaaattactatc 560  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||    
T  21145515 cctatgattacactgaattatgtcatttttt-tcaaattattatc 21145472  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 546
Target Start/End: Complemental strand, 34741881 - 34741845
Alignment:
Q  510 acaacacctataattacactgaattatgtcatttttt 546  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  34741881 acaacacttataattacacttaattatgtcatttttt 34741845  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 560
Target Start/End: Original strand, 40747781 - 40747826
Alignment:
Q  513 acacctataattacactgaattatgtcattttttctcaaattactatc 560  Q
    ||||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  40747781 acacctataattacattgaattatgtca--ttttctcaaattattatc 40747826  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 560
Target Start/End: Original strand, 20743283 - 20743331
Alignment:
Q  510 acaacacctataattacactgaattatgtcattttttctcaaattactatc 560  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||| ||||    
T  20743283 acaacacctatgattacactgaattatgtca--ttttctcaaattattatc 20743331  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 560
Target Start/End: Original strand, 30520444 - 30520490
Alignment:
Q  513 acacctataattacactgaattatgtcattttttctcaaattactatc 560  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  30520444 acacctatgattacactgaattatgtcatttttt-tcaaattattatc 30520490  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 32910603 - 32910557
Alignment:
Q  512 aacacctataattacactgaattatgtcattttttctcaaattactatc 560  Q
    |||||| ||||||||||||||||||||||  ||||||||||||| ||||    
T  32910603 aacacccataattacactgaattatgtca--ttttctcaaattattatc 32910557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 560
Target Start/End: Complemental strand, 24343558 - 24343513
Alignment:
Q  513 acacctataattacactgaattatgtcattttttctcaaattactatc 560  Q
    |||||||||||||||||||||||||| |  ||||||||||||| ||||    
T  24343558 acacctataattacactgaattatgtaa--ttttctcaaattattatc 24343513  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 30298991 - 30298948
Alignment:
Q  520 taattacactgaattatgtcattttttctcaaattactatctgtg 564  Q
    ||||||||||||||||||||||||||| |||||||| || |||||    
T  30298991 taattacactgaattatgtcatttttt-tcaaattattagctgtg 30298948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 30327859 - 30327816
Alignment:
Q  520 taattacactgaattatgtcattttttctcaaattactatctgtg 564  Q
    ||||||||||||||||||||||||||| |||||||| || |||||    
T  30327859 taattacactgaattatgtcatttttt-tcaaattattagctgtg 30327816  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 547
Target Start/End: Original strand, 11308012 - 11308046
Alignment:
Q  513 acacctataattacactgaattatgtcattttttc 547  Q
    |||||||| ||||||||||||||||||||||||||    
T  11308012 acacctatgattacactgaattatgtcattttttc 11308046  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 547
Target Start/End: Original strand, 12668431 - 12668465
Alignment:
Q  513 acacctataattacactgaattatgtcattttttc 547  Q
    |||| ||||||||||||||||||||||||||||||    
T  12668431 acacttataattacactgaattatgtcattttttc 12668465  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 564
Target Start/End: Complemental strand, 14692510 - 14692462
Alignment:
Q  513 acacctataattacactgaattatgtcattttttctcaaattactatctgtg 564  Q
    ||||||||| ||||||||||||||||||   |||||||||||| ||||||||    
T  14692510 acacctatagttacactgaattatgtca---tttctcaaattattatctgtg 14692462  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 545
Target Start/End: Original strand, 18586288 - 18586329
Alignment:
Q  504 tcggatacaacacctataattacactgaattatgtcattttt 545  Q
    ||||| || |||||||||||||||||| ||||||||||||||    
T  18586288 tcggacacgacacctataattacactgtattatgtcattttt 18586329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 24906316 - 24906358
Alignment:
Q  520 taattacactgaattatgtcattttttctcaaattactatctgtg 564  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||    
T  24906316 taattacactgaattatgtcattttt--tcaaattattatctgtg 24906358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 547
Target Start/End: Original strand, 38749569 - 38749605
Alignment:
Q  511 caacacctataattacactgaattatgtcattttttc 547  Q
    |||||| |||||||||| |||||||||||||||||||    
T  38749569 caacacatataattacattgaattatgtcattttttc 38749605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 544
Target Start/End: Complemental strand, 1830399 - 1830363
Alignment:
Q  508 atacaacacctataattacactgaattatgtcatttt 544  Q
    |||| |||||||| |||||||||||||||||||||||    
T  1830399 atacgacacctatgattacactgaattatgtcatttt 1830363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 547
Target Start/End: Original strand, 25948893 - 25948929
Alignment:
Q  511 caacacctataattacactgaattatgtcattttttc 547  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  25948893 caacacttataattacactgaattatgtgattttttc 25948929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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