View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7193_low_3 (Length: 328)

Name: NF7193_low_3
Description: NF7193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7193_low_3
NF7193_low_3
[»] chr1 (7 HSPs)
chr1 (10-319)||(11871192-11871506)
chr1 (27-134)||(14393023-14393130)
chr1 (167-277)||(18628988-18629098)
chr1 (225-264)||(26762241-26762280)
chr1 (227-289)||(16219100-16219162)
chr1 (207-289)||(18650452-18650534)
chr1 (227-288)||(19757735-19757796)
[»] chr8 (3 HSPs)
chr8 (235-289)||(41566168-41566222)
chr8 (225-289)||(1029745-1029808)
chr8 (213-289)||(10659204-10659280)
[»] chr4 (3 HSPs)
chr4 (227-277)||(1745414-1745464)
chr4 (212-255)||(25100320-25100363)
chr4 (218-255)||(53813977-53814014)
[»] chr2 (2 HSPs)
chr2 (209-289)||(39228859-39228939)
chr2 (234-283)||(35114590-35114639)
[»] chr6 (2 HSPs)
chr6 (234-289)||(29032684-29032739)
chr6 (235-289)||(3008850-3008904)
[»] chr3 (1 HSPs)
chr3 (213-258)||(51663994-51664039)
[»] chr7 (1 HSPs)
chr7 (227-255)||(11203359-11203387)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 11871192 - 11871506
Alignment:
Q  10 catcatcacagtttaaagcctttgatttctggttcctttctgatgtttggagatctgctgatttcttggtttccgattcgccgccttcacgacggtggtc 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11871192 catcctcacagtttaaagcctttgatttctggttcctttctgatgtttggagatctgctgatttcttggtttccgattcgccgcctttacgacggtggtc 11871291  T
Q  110 ttggggcaattttggtgttcctgttcgctttggttgttaatgtaccgtgcattggttttttacggtgcttcagttacgtaaacatgaaagggtctgatac 209  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||     |||||| |||||||||||| |||    
T  11871292 ttggggaagttttggtgttcctattcgctttggttgttaatgtaccgtgcgttggttttttacgatggttca-----gtaaacctgaaagggtctgttac 11871386  T
Q  210 aaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctga----------gttgttttctcga 299  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||||||  |||||||  |||||| |||||||||||          |||||||||||||    
T  11871387 aaaaacccgaaagaatctgattcgtttaacccgaaagggtctggttacgggcgtactgaactcataccatgatctgagttcttacgcgttgttttctcga 11871486  T
Q  300 aagagcttttattcttgatg 319  Q
    ||||||||||||||||||||    
T  11871487 aagagcttttattcttgatg 11871506  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 14393023 - 14393130
Alignment:
Q  27 gcctttgatttctggttcctttctgatgtttggagatctgctgatttcttggtttccgattcgccgccttcacgacggtggtcttggggcaattttggtg 126  Q
    ||||||||||||| ||||||||  ||| | | ||||||||| |||||||||| |||||||||||||| |||||| |  |||||||||||   ||||||||    
T  14393023 gcctttgatttctagttcctttaagatctgttgagatctgcagatttcttggcttccgattcgccgctttcacgccaatggtcttggggttgttttggtg 14393122  T
Q  127 ttcctgtt 134  Q
    || |||||    
T  14393123 tttctgtt 14393130  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 18629098 - 18628988
Alignment:
Q  167 ttttacggtgcttcagttacgtaaacatgaaagggtctgatacaaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtact 266  Q
    |||| ||||| ||| |||||||||||  ||||||||||| |||||||||   |||   |||||||||||||||   ||||||||||||||||  |||| |    
T  18629098 ttttgcggtggttcggttacgtaaacccgaaagggtctgttacaaaaactcaaaatggtctggttcgtttaacttgaaagggtctggttactgacgtatt 18628999  T
Q  267 agactcatccc 277  Q
     ||||||||||    
T  18628998 ggactcatccc 18628988  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 26762241 - 26762280
Alignment:
Q  225 tctggttcgtttaacccaaaagggtctggttactagcgta 264  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  26762241 tctggttcgtttaacccgaaagggtctggttactaacgta 26762280  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 16219100 - 16219162
Alignment:
Q  227 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 289  Q
    ||||||| ||||||||||||||||||  || || |||| |||||||||||  |||||||||||    
T  16219100 tggttcgattaacccaaaagggtctgactagtaacgtattagactcatcctttgatctgagtt 16219162  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 18650534 - 18650452
Alignment:
Q  207 tacaaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 289  Q
    |||||||||| |||||  | |||||||||||||||  |||||| ||||||||  |||| | |||||||||| |||||| ||||    
T  18650534 tacaaaaacccgaaagggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatcttagtt 18650452  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 19757735 - 19757796
Alignment:
Q  227 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagt 288  Q
    ||||| ||||||||| ||||||||| ||| ||| |||| | ||||||||||| |||||||||    
T  19757735 tggtttgtttaacccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 19757796  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 41566168 - 41566222
Alignment:
Q  235 ttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 289  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  41566168 ttaacccataagggtctggttactaacgtattagactcatcccacgatctgagtt 41566222  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 1029808 - 1029745
Alignment:
Q  225 tctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 289  Q
    ||||||||  ||||||| |||||||||| |||||| |||| | ||||||||||| ||||||||||    
T  1029808 tctggttctattaacccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagtt 1029745  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 10659280 - 10659204
Alignment:
Q  213 aacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 289  Q
    |||| ||||| |||||||||||||||||  |||| |||||||| ||  |||| | ||||||||||  ||||||||||    
T  10659280 aacccgaaaggatctggttcgtttaacctgaaagagtctggttgctgacgtattggactcatccctcgatctgagtt 10659204  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 1745414 - 1745464
Alignment:
Q  227 tggttcgtttaacccaaaagggtctggttactagcgtactagactcatccc 277  Q
    ||||||||||||||| ||||||||||||||||| |||| | ||||||||||    
T  1745414 tggttcgtttaacccgaaagggtctggttactaacgtattggactcatccc 1745464  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 25100320 - 25100363
Alignment:
Q  212 aaacctgaaagaatctggttcgtttaacccaaaagggtctggtt 255  Q
    ||||| |||||  |||||||||||||||||||||||||||||||    
T  25100320 aaacccgaaagggtctggttcgtttaacccaaaagggtctggtt 25100363  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 53814014 - 53813977
Alignment:
Q  218 gaaagaatctggttcgtttaacccaaaagggtctggtt 255  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  53814014 gaaagagtctggttcgtttaacccgaaagggtctggtt 53813977  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 39228859 - 39228939
Alignment:
Q  209 caaaaacctgaaagaatctggttcgtttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 289  Q
    ||||||||||||||  | ||||||  ||||||| ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  39228859 caaaaacctgaaaggctatggttctgttaacccgaaaggttctggttactaacgtattcgactcatccctcgatctgagtt 39228939  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 35114639 - 35114590
Alignment:
Q  234 tttaacccaaaagggtctggttactagcgtactagactcatcccatgatc 283  Q
    ||||||||||||||||||||||| |  |||| |||||||||||| |||||    
T  35114639 tttaacccaaaagggtctggttattgacgtattagactcatcccttgatc 35114590  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 29032684 - 29032739
Alignment:
Q  234 tttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 289  Q
    |||||||||||| ||||||||||||| |||| | ||||||||||  ||||||||||    
T  29032684 tttaacccaaaatggtctggttactaacgtattggactcatccctcgatctgagtt 29032739  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 3008904 - 3008850
Alignment:
Q  235 ttaacccaaaagggtctggttactagcgtactagactcatcccatgatctgagtt 289  Q
    ||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||    
T  3008904 ttaacccgaaagggtctggttactaacgtattagactcatccttcgatctgagtt 3008850  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 51664039 - 51663994
Alignment:
Q  213 aacctgaaagaatctggttcgtttaacccaaaagggtctggttact 258  Q
    |||| |||||| ||||||||| ||||||| ||||||||||||||||    
T  51664039 aacccgaaagagtctggttcgattaacccgaaagggtctggttact 51663994  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 11203387 - 11203359
Alignment:
Q  227 tggttcgtttaacccaaaagggtctggtt 255  Q
    |||||||||||||||||||||||||||||    
T  11203387 tggttcgtttaacccaaaagggtctggtt 11203359  T

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