View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7194_high_1 (Length: 674)

Name: NF7194_high_1
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7194_high_1
NF7194_high_1
[»] chr8 (3 HSPs)
chr8 (18-583)||(33404311-33404875)
chr8 (83-149)||(28377639-28377705)
chr8 (49-138)||(27121810-27121899)
[»] chr7 (3 HSPs)
chr7 (83-139)||(27484143-27484199)
chr7 (83-149)||(8839375-8839441)
chr7 (83-149)||(13254195-13254261)
[»] chr2 (5 HSPs)
chr2 (81-149)||(3772635-3772703)
chr2 (86-148)||(993736-993798)
chr2 (83-149)||(17981479-17981545)
chr2 (96-149)||(44752301-44752354)
chr2 (83-147)||(5394380-5394444)
[»] chr6 (3 HSPs)
chr6 (83-148)||(278374-278439)
chr6 (86-149)||(25084015-25084078)
chr6 (83-149)||(21910186-21910252)
[»] chr4 (2 HSPs)
chr4 (83-148)||(38766071-38766136)
chr4 (82-148)||(22189481-22189547)
[»] chr3 (2 HSPs)
chr3 (32-149)||(38331109-38331226)
chr3 (85-149)||(25224680-25224744)
[»] chr5 (1 HSPs)
chr5 (117-149)||(12309397-12309429)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Original strand, 33404311 - 33404875
Alignment:
Q  18 tgtaggacttaattatgggcggaaaactcaccctaacagttttaatgctgatacatccttaaaattggattcaaactcaggactttggttgagctataag 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  33404311 tgtaggacttaattatgggcggaaaactcaccctaaaagttttaatgctgctacatgcttaaaattggattcaaacccatgactttggttgagctataag 33404410  T
Q  118 agacttgtgttatctcatctaagcgctcttggctgctcaacttatatttaattattaacaattatcaattagaaccttttttctttggaaaataaaataa 217  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33404411 agacttgtgtcatctcatctaagcgctcttgggtgctcaacttatatttaattattaacaattatcaattagaaccttttttctttggaaaataaaataa 33404510  T
Q  218 ctaatgacaaaatattagttggcattgtttttacatgaaaaaacaagaaagctatttttttgttttgaagcaaacttnnnnnnnnnnnnnnnnnttggtg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                 ||||||    
T  33404511 ctaatgacaaaatattagttggcattgtttttacatgaaaaaacaagaaagcta-ttttttgttttgaagcaaactt--aaaaaaaaataaaaattggtg 33404607  T
Q  318 gtgttcaagggttcgaaccccataccttgtcgttaccaactgagttcaattcatgggcaaaagcaaactttaaatttgtc-aacnnnnnnnngaacgcta 416  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||          |||||||    
T  33404608 gtgttcgagggttcgaatcccataccttgtcgttaccaactgagttcaactcatgggcacaagcaaactttaaatttgtcaaaaaaaaaaaaaaacgcta 33404707  T
Q  417 ttatacctaccaaaattgagtgaatatttaaaataatattcatgttatttctatatttttagaatgatac-aaatctgtaagtataactgagcccaaaag 515  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33404708 ttatacctagcaaaattgagtgaatatttaaaataatattcattttatttctatatttttagaatgatacaaaatctgtaagtataactgagcccaaaag 33404807  T
Q  516 tgtatgaatatatatgataaaccttnnnnnnnnntcttctctaaagtaagagctcatacaagatagag 583  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  33404808 tgtatgaatatatatgataaaccttaaacaaaaatcttctctaaagtaagagctcatacaagatagag 33404875  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 28377705 - 28377639
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    ||||||| |||||| ||||||| || ||||| |||| ||| |||||||||||| |||||||||||||    
T  28377705 tggattcgaactcatgactttgattaagctaaaagaaactcgtgttatctcatgtaagcgctcttgg 28377639  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 27121810 - 27121899
Alignment:
Q  49 cctaacagttttaatgctgatacatccttaaaattggattcaaactcaggactttggttgagctataagagacttgtgttatctcatcta 138  Q
    ||||| ||||||||  ||| | ||| ||||||  ||||||| ||| ||| ||||||||| ||||| |||||||  |||||||||||||||    
T  27121810 cctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgtgttatctcatcta 27121899  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 27484143 - 27484199
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaa 139  Q
    |||||| ||||||||||| |||||| ||||| ||||||||||||| |||||||||||    
T  27484143 tggatttaaactcaggaccttggttaagctagaagagacttgtgtcatctcatctaa 27484199  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 8839375 - 8839441
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    ||||||| ||| |||||| |||||| ||||| |||||||  || | |||||||||||||||||||||    
T  8839375 tggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttgg 8839441  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 13254195 - 13254261
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    ||||||| |||||||||| |||||| ||||| |||||||  ||   |||||||||||||||||||||    
T  13254195 tggattcgaactcaggaccttggttaagctagaagagacccgttccatctcatctaagcgctcttgg 13254261  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 3772635 - 3772703
Alignment:
Q  81 attggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    ||||||||| |||| ||||| |||||| |  || ||||||||||||| |||||||||||||||||||||    
T  3772635 attggattcgaacttaggaccttggttaaattagaagagacttgtgtcatctcatctaagcgctcttgg 3772703  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 993798 - 993736
Alignment:
Q  86 attcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttg 148  Q
    |||| ||| |||||| |||||| |||||||||||||  |||| ||||||||||||||||||||    
T  993798 attcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaagcgctcttg 993736  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 17981545 - 17981479
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    |||||| ||| |||||||||||||| ||||| |||||||| ||   |||||||||||||||| ||||    
T  17981545 tggatttaaattcaggactttggttaagctagaagagactcgttccatctcatctaagcgctattgg 17981479  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 44752301 - 44752354
Alignment:
Q  96 aggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    |||| ||||||| ||||| ||||||||||| | ||||||||||||||| |||||    
T  44752301 aggagtttggttaagctagaagagacttgtatcatctcatctaagcgcacttgg 44752354  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 5394444 - 5394380
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctctt 147  Q
    ||||||| ||| |||||| |||||| ||||| |||||||| ||   |||||||||||||||||||    
T  5394444 tggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctctt 5394380  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 278439 - 278374
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttg 148  Q
    |||||||||||||| ||| || ||| ||||| |||||||| |||| ||||||||||| ||||||||    
T  278439 tggattcaaactcaagaccttagttaagctagaagagactcgtgtcatctcatctaaacgctcttg 278374  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 25084078 - 25084015
Alignment:
Q  86 attcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    |||| |||||| ||||||| || ||||| ||||||||||||| |||||||||||| | ||||||    
T  25084078 attcgaactcaagactttgattaagctagaagagacttgtgtcatctcatctaagtgttcttgg 25084015  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 21910252 - 21910186
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    ||||||| ||| |||||  |||||| ||||| ||||||||||| | ||||||||||| |||||||||    
T  21910252 tggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaaacgctcttgg 21910186  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 38766136 - 38766071
Alignment:
Q  83 tggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttg 148  Q
    ||||||||||| |||||| |||||| ||||| |||||||| ||   ||||||||||||||||||||    
T  38766136 tggattcaaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctcttg 38766071  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 22189481 - 22189547
Alignment:
Q  82 ttggattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttg 148  Q
    |||||||| ||||| |||| |||||| ||||| ||||||||  ||| |||||||||||| |||||||    
T  22189481 ttggattcgaactctggaccttggttaagctagaagagactcatgtcatctcatctaagtgctcttg 22189547  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 38331226 - 38331109
Alignment:
Q  32 atgggcggaaaactcaccctaacagttttaatgctgatacatccttaaaattggattcaaactcaggactttggttgagctataagagacttgtgttatc 131  Q
    |||||||| || ||| | |||| |||||||| |||| | ||| || ||| ||||||||||||||||||| |||||| || || |||||||  |    |||    
T  38331226 atgggcggcaagctctctctaagagttttaacgctgctgcatgctcaaagttggattcaaactcaggacattggttaagttagaagagacccgatccatc 38331127  T
Q  132 tcatctaagcgctcttgg 149  Q
    ||||||||||||||||||    
T  38331126 tcatctaagcgctcttgg 38331109  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 25224744 - 25224680
Alignment:
Q  85 gattcaaactcaggactttggttgagctataagagacttgtgttatctcatctaagcgctcttgg 149  Q
    ||||| ||| |||||| |||||| ||||| |||||||  || | |||||||||||||||||||||    
T  25224744 gattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttgg 25224680  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 12309429 - 12309397
Alignment:
Q  117 gagacttgtgttatctcatctaagcgctcttgg 149  Q
    ||||||||||||||||||| |||||||||||||    
T  12309429 gagacttgtgttatctcatttaagcgctcttgg 12309397  T

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