View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7194_high_10 (Length: 280)
Name: NF7194_high_10
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7194_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 41268436 - 41268687
Alignment:
| Q |
5 |
gctatattattcttaatgacattttcaagcaatgcttattggccaccttcacctggctactggccaagttcaaagttcaagtctatgaacttttacaaag |
104 |
Q |
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| T |
41268436 |
gctattttattcttaatgacattttcaagcaatgcttattggccaccttcacctggctactggccaagttcaaagttcaagtctatgaacttttacaaag |
41268535 |
T |
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| Q |
105 |
gttttacaaaccgttggggccctcaacaccaaagactagaacaaaatgcattaactatttggcttgatagaacctcaggttctgagtctgatcatcagtt |
204 |
Q |
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| T |
41268536 |
gttttacaaaccgttggggccctcaacaccaaagactagaacaaaatgcattaactatttggcttgatagaacctcaggttctgagtctgatcatcagtt |
41268635 |
T |
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| Q |
205 |
acacatgttttctactagttaaatatcattgaaatttaattattatcgttgc |
256 |
Q |
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| T |
41268636 |
acacatgttttctactagttaaatatcattgaaatttaattattatcgttgc |
41268687 |
T |
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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 27686209 - 27686036
Alignment:
| Q |
11 |
ttattcttaatgacattttcaagcaatgcttattggccaccttcacctggctactggccaagttcaaagttcaagtctatgaacttttacaaaggtttta |
110 |
Q |
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| T |
27686209 |
ttattctttatggcttcttcaagcaatgcctattggccaccttcccccggttactggccaagttccaaagtcaggtctatgagcttttacaatggttata |
27686110 |
T |
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| Q |
111 |
caaaccgttggggccctcaacaccaaagactagaacaaaatgcattaactatttggcttgatagaacctcaggt |
184 |
Q |
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| T |
27686109 |
gaaacctttggggacctcaacaccaaagcatggatcaacatggaacaactatttggcttgatagaacctcaggt |
27686036 |
T |
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