View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7194_high_15 (Length: 226)
Name: NF7194_high_15
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7194_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41733534 - 41733745
Alignment:
| Q |
1 |
ctaataaaccaattgctattttgtctattcccaactcgtgaatacgttttagattcaatgacatttgctctataagggattcagtgaagataaatatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
41733534 |
ctaataaaccaattgctattttgtttattcccaactcgtgaatacgttttagattcaatgacatttgctttataagggattcagtgaagacaaatatatc |
41733633 |
T |
|
| Q |
101 |
ctgccacaaagaaaaacaaaaggcgataattgatcgacaactaaagtcgataaaaaattgtattaactagaactcgaactcatattatctcaaacgaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41733634 |
ctgccacaaagaaaaacaaaaggcgataattgatcgacaagtaaagtcgatcaaaaattgtattaactagaactcgaactcagattatctcaaacgaatc |
41733733 |
T |
|
| Q |
201 |
acccttaaatga |
212 |
Q |
| |
|
||| |||||||| |
|
|
| T |
41733734 |
acctttaaatga |
41733745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University